View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_high_21 (Length: 326)
Name: NF1334_high_21
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 25002928 - 25002684
Alignment:
| Q |
1 |
tctagcgaggcatcgagggcggttaatggttggattgaagcatggaacaacgttatccaaattctgttgtggtggagaagagggagaagaagttggtgag |
100 |
Q |
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| T |
25002928 |
tctagcgaggcatcgagggcggttaatggttgggttgaagcatggaacaacgttatccaaattctgttgtggtggagaagagggagaagaagttggtgag |
25002829 |
T |
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| Q |
101 |
agttgagagagatctaataagttgatttgattttgcagtttcctgctggctttgattttcttggagtccctcagttttgcaagagctcctggctttagat |
200 |
Q |
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| T |
25002828 |
agttgagagagatctaataagttgatttgattttgcagtttcctgctggctttgattttcttggagtccctcagttttgcaagagctcctggcttgagat |
25002729 |
T |
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| Q |
201 |
aacgacgtgatgatggagaagatgaattaggtttagggcttcctt |
245 |
Q |
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| T |
25002728 |
aacgacgtggtgatggagaagatgaattaggtttagggcttcctt |
25002684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 24998628 - 24998857
Alignment:
| Q |
2 |
ctagcgaggcatcgagggcggttaatggttggattgaagcatggaacaacgttatccaaattctgttgtggtggagaagagggagaag---aagttggtg |
98 |
Q |
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| T |
24998628 |
ctagcaaggcagcgagggcggttaaaggtgggatcgaagcaaggtacgacattatccaaattctgtggtgatggagaaaaggaaggaggtgaaattggtg |
24998727 |
T |
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| Q |
99 |
agagttga-gagagatctaataagttgatttgattttgcagtttcctgctggctttgattttcttggagtccctca---gttttgcaagagctcctggct |
194 |
Q |
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| T |
24998728 |
tt-gttgttgagagttctaataagttgatttgattttgcagcttcctgttggctttgattttcttggagtccctcaatttttttgcaagggctcctggct |
24998826 |
T |
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| Q |
195 |
ttagataacgacgtgatgatggagaagatga |
225 |
Q |
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| T |
24998827 |
ttagataacgacgtggggatggagaggatga |
24998857 |
T |
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