View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_high_23 (Length: 312)
Name: NF1334_high_23
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_high_23 |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 14723224 - 14722954
Alignment:
| Q |
11 |
cagagagcaatatggttgaccattcaaagagcacatacagagttgactattggctttcaactggtagaaactataaagaaagagtccatccattcataga |
110 |
Q |
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| T |
14723224 |
cagagagcaatatggttgaccattcaaagagcacatacagagttgactattggctttcaactggtagaaactataaagaaagagtccatccattcataga |
14723125 |
T |
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| Q |
111 |
cttactcatcctttccaacaacaatcttctctaaagtaagagtccatccattcatcttgctcacccctcaagtggaagctttttcatccgcgtagactta |
210 |
Q |
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| T |
14723124 |
cttactcatcctttccaacaacaatcttctctaaagtaagagtccatccattcatcttgctcacccctcaagtggaagctttttcatccgcgtagactta |
14723025 |
T |
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| Q |
211 |
ctcttgcaccgccattgtcaaaggcaccaacaaacaccttgtcaagaagatttttgaaacaaggaggtggt |
281 |
Q |
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| T |
14723024 |
ctcttgcaccgccattgtcaaaggcaccaacaaacaccttgtcaagaagatttttgaaacaaggaggtggt |
14722954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 17600968 - 17601238
Alignment:
| Q |
11 |
cagagagcaatatggttgaccattcaaagagcacatacagagttgactattggctttcaactggtagaaactataaagaaagagtccatccattcataga |
110 |
Q |
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| T |
17600968 |
cagagagcaatatggttgaccattcaaagagcacatacagagttgactattggctttcaactggtagaaactataaagaaagagtccatccattcataga |
17601067 |
T |
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| Q |
111 |
cttactcatcctttccaacaacaatcttctctaaagtaagagtccatccattcatcttgctcacccctcaagtggaagctttttcatccgcgtagactta |
210 |
Q |
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| T |
17601068 |
cttactcatcctttctaacaacaatcttctctaaagtaagagtccattcattcatcttgctcacccctcaagtggaagctttttcatctgtgtagactta |
17601167 |
T |
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| Q |
211 |
ctcttgcaccgccattgtcaaaggcaccaacaaacaccttgtcaagaagatttttgaaacaaggaggtggt |
281 |
Q |
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| T |
17601168 |
ctcttgcaccgccattgtcaaaggcaccaacaaacaccttgtcaagaagatttttgaaacaaggaggtggt |
17601238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 31509598 - 31509550
Alignment:
| Q |
150 |
gagtccatccattcatcttgctcacccctcaagtggaagctttttcatc |
198 |
Q |
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| T |
31509598 |
gagtccatcaattcatcatgctcacccctcaagcggaagctctttcatc |
31509550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 21504802 - 21504850
Alignment:
| Q |
150 |
gagtccatccattcatcttgctcacccctcaagtggaagctttttcatc |
198 |
Q |
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| T |
21504802 |
gagtccatcgattcatcatgctcacccctcaagtggaagttctttcatc |
21504850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 30313153 - 30313102
Alignment:
| Q |
150 |
gagtccatccattcatcttgctcacccctcaagtggaagctttttcatccgc |
201 |
Q |
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| T |
30313153 |
gagtccaacaattcatcatgctcacccctcaagcggaagctctttcatccgc |
30313102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 39814 - 39766
Alignment:
| Q |
150 |
gagtccatccattcatcttgctcacccctcaagtggaagctttttcatc |
198 |
Q |
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| T |
39814 |
gagttcatcaattcatcatgctcacccctcaagcggaagctctttcatc |
39766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 40518559 - 40518519
Alignment:
| Q |
150 |
gagtccatccattcatcttgctcacccctcaagtggaagct |
190 |
Q |
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| T |
40518559 |
gagtccatcaattcatcatgctcccccctcaagtggaagct |
40518519 |
T |
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