View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_high_24 (Length: 299)
Name: NF1334_high_24
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 275
Target Start/End: Complemental strand, 40667242 - 40666973
Alignment:
| Q |
6 |
aataacataacaatgcatgagtttatagtaactagaaacaaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtcc |
105 |
Q |
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| T |
40667242 |
aataacatagcaatgcatgagtttatagtaactagaaacaaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtct |
40667143 |
T |
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| Q |
106 |
agccttgtcaaatatttccctaacattggcctcactttcaccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattca |
205 |
Q |
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| T |
40667142 |
agccttgtcaaaaatttccctaacattggcatcactttcaccaaaccacattgtaagcaactctgggccttttatactgatgaagttagcttgacattca |
40667043 |
T |
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| Q |
206 |
ttagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatg |
275 |
Q |
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| T |
40667042 |
ttagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactcctttggatg |
40666973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 275
Target Start/End: Original strand, 40722762 - 40723032
Alignment:
| Q |
6 |
aataacataacaatgcatgagtttatagtaactagaaa-caaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtc |
104 |
Q |
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| T |
40722762 |
aataacatagcaatccaggagtttatagtaactagaaaaccaacctgagtggcaatggaatcaagctcatcaaaaaagaggacacatggagctgattgtc |
40722861 |
T |
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| Q |
105 |
cagccttgtcaaatatttccctaacattggcctcactttcaccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattc |
204 |
Q |
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| T |
40722862 |
tagccttgtcaaaaatttccctaacattggcttcactttcaccaaaccacattgtaagtaattctaggccttttatactgatgaagttagcttgacattc |
40722961 |
T |
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| Q |
205 |
attagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatg |
275 |
Q |
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| T |
40722962 |
attagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatg |
40723032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 43 - 273
Target Start/End: Complemental strand, 27978528 - 27978298
Alignment:
| Q |
43 |
acaaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtccagccttgtcaaatatttccctaacattggcctcactt |
142 |
Q |
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|||||||||||| ||||| || ||||| |||||||| || |||||||||||||| || | ||| |||||||| |||||||| ||||| ||||||||| |
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| T |
27978528 |
acaaacctgagttgcaatagaatcaagttcatcaaagaaaaggacacatggagcagaaccacgagctttgtcaaaaatttccctcacattagcctcactt |
27978429 |
T |
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| Q |
143 |
tcaccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatc |
242 |
Q |
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|| |||||||||||||| |||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||||||| || | ||||| ||||| | |
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| T |
27978428 |
tctccaaaccacattgtgagcagctcgggacctttgatactaatgaagtttgcttgacattcattggcaatagctttggccaaaagggttttaccacaac |
27978329 |
T |
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| Q |
243 |
ccggaggaccatagaagagaactccttttga |
273 |
Q |
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| T |
27978328 |
caggaggaccatagaacagaactccctttga |
27978298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 267
Target Start/End: Original strand, 41091809 - 41092030
Alignment:
| Q |
46 |
aacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtccagccttgtcaaatatttccctaacattggcctcactttca |
145 |
Q |
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||||||||| |||||||||||||| |||||||| || |||||||||||||| || | ||||||||||| |||||||| || || ||||||||||| |
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| T |
41091809 |
aacctgagttgcaatggagtcaagttcatcaaagaataggacacatggagcagaaccacgggccttgtcaaaaatttccctcacgtttgcctcactttct |
41091908 |
T |
|
| Q |
146 |
ccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccg |
245 |
Q |
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|||||||||||||| || | || || |||||||||||||| ||||| || || |||||||| ||||| ||||| || || | ||||| |||||||| | |
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| T |
41091909 |
ccaaaccacattgtgagtagctcgggacctttgatactgataaagtttgcctggcattcattggcaatagcttttgccaatagtgttttaccacatccag |
41092008 |
T |
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| Q |
246 |
gaggaccatagaagagaactcc |
267 |
Q |
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||||||||||||| |||||||| |
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| T |
41092009 |
gaggaccatagaaaagaactcc |
41092030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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