View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1334_high_26 (Length: 268)

Name: NF1334_high_26
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1334_high_26
NF1334_high_26
[»] chr1 (3 HSPs)
chr1 (2-260)||(45936215-45936473)
chr1 (110-260)||(45924375-45924525)
chr1 (120-252)||(26303197-26303329)
[»] chr3 (2 HSPs)
chr3 (2-107)||(15818234-15818339)
chr3 (5-107)||(15831347-15831448)
[»] chr7 (1 HSPs)
chr7 (112-252)||(42240150-42240290)
[»] chr8 (1 HSPs)
chr8 (144-252)||(12631272-12631380)
[»] chr4 (3 HSPs)
chr4 (2-46)||(5164639-5164683)
chr4 (2-46)||(5192071-5192115)
chr4 (2-32)||(5186493-5186523)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 45936215 - 45936473
Alignment:
Q  2 gaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaattgacaaatttatgtcagcattgtatatgtatcatatga 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  45936215 gaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaaatgacatatttatgtcagcattgtatatgtatcatatga 45936314  T
Q  102 gtatagattcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagaga 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45936315 gtatagattcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagaga 45936414  T
Q  202 ggaatccacatatccatgatccagatgatgttttccctggtcttgttatcagtattatc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45936415 ggaatccacatatccatgatccagatgatgttttccctggtcttgttatcagaattatc 45936473  T

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Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 45924375 - 45924525
Alignment:
Q  110 tcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatcca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45924375 tcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatcca 45924474  T
Q  210 catatccatgatccagatgatgttttccctggtcttgttatcagtattatc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45924475 catatccatgatccagatgatgttttccctggtcttgttatcagaattatc 45924525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 26303197 - 26303329
Alignment:
Q  120 tgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatg 219  Q
    |||||||||||||| ||||| || || || || |||||  | ||||| ||||||||||||||||| || | |||||| ||   |||||||||||| ||||    
T  26303197 tgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccacatattcatg 26303296  T
Q  220 atccagatgatgttttccctggtcttgttatca 252  Q
    |||| ||||||||||||||||| ||||||||||    
T  26303297 atcctgatgatgttttccctggccttgttatca 26303329  T

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Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 15818234 - 15818339
Alignment:
Q  2 gaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaattgacaaatttatgtcagcattgtatatgtatcatatga 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  15818234 gaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaaatgacatatttatgtcagcattgtatatgtatcatatga 15818333  T
Q  102 gtatag 107  Q
    ||||||    
T  15818334 gtatag 15818339  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 15831347 - 15831448
Alignment:
Q  5 aattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaattgacaaatttatgtcagcattgtatatgtatcatatgagta 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  15831347 aattcaaatacaaaatctaggcaatggctaaa-cagcatttttatttttcattttgaaatgacatatttatgtcagcattgtatatgtatcatatgagta 15831445  T
Q  105 tag 107  Q
    |||    
T  15831446 tag 15831448  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 42240290 - 42240150
Alignment:
Q  112 acaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccaca 211  Q
    ||||||| ||||||||||||||||| ||  | ||||| || || ||  | ||||| |||||||| |||||||| || |||||||||||   |||||||||    
T  42240290 acaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgtagaagagaatccaca 42240191  T
Q  212 tatccatgatccagatgatgttttccctggtcttgttatca 252  Q
    ||| ||||| |||||||||||||| || |||||||||||||    
T  42240190 tattcatgacccagatgatgtttttccaggtcttgttatca 42240150  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 12631380 - 12631272
Alignment:
Q  144 gaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatgatccagatgatgttttccctggtc 243  Q
    |||||||| ||||| |||||||| ||||| ||||||  ||| || |||||||| ||||  ||||| ||||| ||||| || |||||||| ||||||||||    
T  12631380 gaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatgtcttccctggtc 12631281  T
Q  244 ttgttatca 252  Q
    |||||||||    
T  12631280 ttgttatca 12631272  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 5164639 - 5164683
Alignment:
Q  2 gaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  5164639 gaaaattcaaatacaaaatttaggcaatggctaaaacagcatttt 5164683  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 5192071 - 5192115
Alignment:
Q  2 gaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt 46  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||    
T  5192071 gaaaattcatataaaaaatctaggcaatggctaaaacagcatttt 5192115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 5186493 - 5186523
Alignment:
Q  2 gaaaattcaaatacaaaatctaggcaatggc 32  Q
    |||||||||||||||||||||||||||||||    
T  5186493 gaaaattcaaatacaaaatctaggcaatggc 5186523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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