View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_high_4 (Length: 587)
Name: NF1334_high_4
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 224 - 577
Target Start/End: Complemental strand, 190741 - 190384
Alignment:
| Q |
224 |
tttgaacggcgaaatgaataatatgacgcagttttgctattgagattgataggcattgccagctttgaagtggatatgaaaatcccaccaactttcattt |
323 |
Q |
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| T |
190741 |
tttgatcggcgaaatgaataatatgacgcagttttgctattgagattgataggcattgccagctttgaagtggatatggaaatcccaccaactttcattt |
190642 |
T |
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| Q |
324 |
tcaaatttatttattgatttgtaaatctaaatattttagtgacatagaagaggaaaagtaaaccttttcctccccttc----aatggaacttaaccaata |
419 |
Q |
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| T |
190641 |
tcaaatttatttattgatttgtaaatctaaatattttagtgacatagaagaggaaaagtaaaccttttcctccccttccttcaatggaacttaaccaata |
190542 |
T |
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| Q |
420 |
tatacaataactgataattttattagagagagaaatatggttgaaaatttgaatgctcgactacatgttagtttatttatttataataaggaattggttg |
519 |
Q |
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| T |
190541 |
tatacaataactgataattttattagagagagaaatatggttgaaaatttgaatgctcgactacatgttagtttatttatttataataaggaattggttg |
190442 |
T |
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| Q |
520 |
catgtagttttgaggaaggggaaccattaattaattggttcatcattgtgagcctatg |
577 |
Q |
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| T |
190441 |
catgtagttttgaggaaggggaaccattaattaattggttcatcattgtgagcctatg |
190384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 31 - 195
Target Start/End: Complemental strand, 190931 - 190767
Alignment:
| Q |
31 |
atcatccatcaactccttcacctcagccatgctcaagaaccttattggaatcacaaaccttctaaactccggtccaacataaacggcaacgtatcctttc |
130 |
Q |
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| T |
190931 |
atcatccatcaactccttcacctcagccatgctcaagaaccttattggaatcacaaaccttctaaactccggtccaacataaacggcaacgtatcctttc |
190832 |
T |
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| Q |
131 |
ggaaccttgctcatcttccggtttccgatgccatccgaagattctctggcttccatcaacaaatg |
195 |
Q |
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| T |
190831 |
ggaaccttgctcatcttccggtttccgatgccatccgaagattctctggcttccattaataaatg |
190767 |
T |
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