View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_high_9 (Length: 469)
Name: NF1334_high_9
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 56 - 460
Target Start/End: Original strand, 2916815 - 2917219
Alignment:
| Q |
56 |
tcttagacatacatggtaccccccttatccctggtagccaatactacatttttccagctagtgaaaaccctaacagtggaggattaaccctaaacaaagt |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
2916815 |
tcttagacatacatggtaccccccttatccctggtagccaatactacatttttccagctagtgaaaaccctaacagtggaggactaaccttaaacaaagt |
2916914 |
T |
|
| Q |
156 |
tggtgatttagagtgtccagtaactgtcctacaaaataatgctatgataggtttaccagttaaattcaccgtcccagaaaacaacaccggtaacatcttg |
255 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2916915 |
tggtgatttagaatgtccagtaactgtcctacaaaataatgctatgataggtttaccagttaaattcaccgtcccagaaaacaacaccggtaatatcttg |
2917014 |
T |
|
| Q |
256 |
actggtaccgatcttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttgttgataataatactcaactaagttgtg |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
2917015 |
actggtaccgatcttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttcttgatcataatactcaactaagttgtg |
2917114 |
T |
|
| Q |
356 |
ttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtgaaacatggatctggtcatgtttataggcttggatt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2917115 |
ttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtgaaacatggatctggtcatgtttataggcttggatt |
2917214 |
T |
|
| Q |
456 |
ttgtt |
460 |
Q |
| |
|
||||| |
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|
| T |
2917215 |
ttgtt |
2917219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 58 - 460
Target Start/End: Original strand, 2930405 - 2930807
Alignment:
| Q |
58 |
ttagacatacatggtaccccccttatccctggtagccaatactacatttttccagctagtgaaaaccctaacagtggaggattaaccctaaacaaagttg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2930405 |
ttagacatacatggtaccccccttatccctggtagccaatactacatttttccagctagtgaaaaccctaacagtggaggactaaccctaaacaaagttg |
2930504 |
T |
|
| Q |
158 |
gtgatttagagtgtccagtaactgtcctacaaaataatgctatgataggtttaccagttaaattcaccgtcccagaaaacaacaccggtaacatcttgac |
257 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| |||||||| |
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|
| T |
2930505 |
gtaatttagagtgtccagtaactgtcctacaaaataatgctatgataggtttaccagttaaattcaccatcccagaaaacagcactggtaatatcttgac |
2930604 |
T |
|
| Q |
258 |
tggtaccgatcttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttgttgataataatactcaactaagttgtgtt |
357 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2930605 |
cggtaccgatcttgagatcgagttcactaaaaaggctgattgtgctgaagcatcaaaatggttgatgtttgttgatcataatactcaactaagttgtgtt |
2930704 |
T |
|
| Q |
358 |
ggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtgaaacatggatctggtcatgtttataggcttggatttt |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2930705 |
ggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtgaaacatggatctggtcatgtttataggcttggatttt |
2930804 |
T |
|
| Q |
458 |
gtt |
460 |
Q |
| |
|
||| |
|
|
| T |
2930805 |
gtt |
2930807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 61 - 460
Target Start/End: Original strand, 24554799 - 24555198
Alignment:
| Q |
61 |
gacatacatggtaccccccttatccctggtagccaatactacatttttccagctagtgaaaaccctaacagtggaggattaaccctaaacaaagttggtg |
160 |
Q |
| |
|
|||| |||||||| ||| |||| |||||||| ||||||||||||||| ||||| ||||| ||||||| |||||||||| |||||||| |||||||||||| |
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|
| T |
24554799 |
gacaaacatggtaaccctcttacccctggtaaccaatactacattttaccagcaagtgataaccctagcagtggaggactaaccctagacaaagttggtg |
24554898 |
T |
|
| Q |
161 |
atttagagtgtccagtaactgtcctacaaaataatgctatgataggtttaccagttaaattcaccgtcccagaaaacaacaccggtaacatcttgactgg |
260 |
Q |
| |
|
||| || ||||||| ||||||||||||||||||||||| | | ||||||||||||||||||||| | | |||||||| ||| |||||||| | || || |
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|
| T |
24554899 |
attcagtgtgtccactaactgtcctacaaaataatgctgtaactggtttaccagttaaattcaccatactagaaaacagcactagtaacatcgttaccgg |
24554998 |
T |
|
| Q |
261 |
taccgatcttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttgttgataataatactcaactaagttgtgttggt |
360 |
Q |
| |
|
||||||||||||||| ||||| | ||| ||||| |||||||||||||| || |||||||||||| |||||||| || ||||||||||||| ||||||| |
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|
| T |
24554999 |
taccgatcttgagatcgagttcattaacaagccagattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggt |
24555098 |
T |
|
| Q |
361 |
attggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtgaaacatggatctggtcatgtttataggcttggattttgtt |
460 |
Q |
| |
|
||||||||| | ||||||||| |||| ||||| ||| ||||| ||||| ||||| ||||||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
24555099 |
attggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttgaaacatggatctggtaatgcttatagggttggattttgtt |
24555198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 61 - 460
Target Start/End: Original strand, 24566502 - 24566907
Alignment:
| Q |
61 |
gacatacatggtaccccccttatccctggtagccaatactacatttttccagctagtgaaaaccctaacagtggaggattaaccctaaacaaagttggtg |
160 |
Q |
| |
|
|||||| |||| |||||||||| ||||||| |||||||||||||||| |||| ||||| ||||||| | ||||||| ||| |||||||||| ||| || |
|
|
| T |
24566502 |
gacataaatggcaccccccttacccctggtggccaatactacattttaccagaaagtgataaccctagtattggaggactaatcctaaacaaaattgatg |
24566601 |
T |
|
| Q |
161 |
atttagagtgtccagtaactgtcctacaaaataatgctatgataggtttaccagttaaattcaccgtcccagaaaacaacaccggtaacatcttgactgg |
260 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||| | || | |||||||||||||||||||||| | | |||||| | ||| |||| |||||| | || |
|
|
| T |
24566602 |
atttagagtgtccagtaaccgtcgtacaagatattactgtaataggtttaccagttaaattcagcatgttagaaaatagcactagtaatatcttgccagg |
24566701 |
T |
|
| Q |
261 |
taccgatcttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttgttgataataatactcaactaagttgtgttggt |
360 |
Q |
| |
|
||| ||||||||||||||||| |||| |||||||||||| ||| |||| || ||||||| ||||||||||||| || | ||||||||||||| ||| ||| |
|
|
| T |
24566702 |
tactgatcttgagattgagttcactacgaagcctgattgcgctaaatcgtcgaaatggtcgatgtttgttgatcatgacactcaactaagttttgtcggt |
24566801 |
T |
|
| Q |
361 |
attggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtga------aacatggatctggtcatgtttataggcttggat |
454 |
Q |
| |
|
||||||||| | | ||| ||| |||| ||||||||| ||||| ||||| ||| |||||| |||||||||||||||||| ||||||| |||||| |
|
|
| T |
24566802 |
attggtggttctgcgaacaatcctggtgtagaaacaaccagtggaaaatttttagtagtgaaacatcaacatggatctggtcatgcttataggattggat |
24566901 |
T |
|
| Q |
455 |
tttgtt |
460 |
Q |
| |
|
|||||| |
|
|
| T |
24566902 |
tttgtt |
24566907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 369
Target Start/End: Original strand, 20505583 - 20505681
Alignment:
| Q |
271 |
gagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttgttgataataatactcaactaagttgtgttggtattggtggt |
369 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||| |||||||| || | | || ||||||||||||||||||| |
|
|
| T |
20505583 |
gagattgagttcacaaagaagcctgattgtgttgaatcatcaaaatggttgatatttattgataatgttattaatatattttgtgttggtattggtggt |
20505681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 6869581 - 6869508
Alignment:
| Q |
254 |
tgactggtaccgatcttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgttt |
327 |
Q |
| |
|
|||| |||||||| ||| |||||||||| |||||||||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
6869581 |
tgacaggtaccgaacttaagattgagttcactaagaagcctaattgtgtcaaatcatcacaatggttgatgttt |
6869508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 369
Target Start/End: Original strand, 20475785 - 20475877
Alignment:
| Q |
277 |
gagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttgttgataataatactcaactaagttgtgttggtattggtggt |
369 |
Q |
| |
|
||||| || ||||||||| |||| | ||||||||||||||||||||| |||||||||| | || |||| | ||||||||||||||||||| |
|
|
| T |
20475785 |
gagttcacaaagaagcctaattgcgttgaatcatcaaaatggttgatatttgttgatagtgttattcaaaaagcttgtgttggtattggtggt |
20475877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 20517633 - 20517672
Alignment:
| Q |
297 |
ttgtgctgaatcatcaaaatggttgatgtttgttgataat |
336 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
20517633 |
ttgtgttgaatcatcaaaatggttgatatttgttgataat |
20517672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 13072350 - 13072249
Alignment:
| Q |
288 |
gaagcctgattgtgctgaatcatcaaaatggttgatgtttgttgataataatactcaactaagttgtgttggtattggtggtgcaacaaactatcatggt |
387 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||||||||||| || |||| | ||||||||||||||||||| || |||||||| |||| |
|
|
| T |
13072350 |
gaagcctgattgtgttgaatcttcaaaatggttgatatttgttgataatgttattcaaaaatcttgtgttggtattggtggtccagaaaactatcctggt |
13072251 |
T |
|
| Q |
388 |
at |
389 |
Q |
| |
|
|| |
|
|
| T |
13072250 |
at |
13072249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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