View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_10 (Length: 480)
Name: NF1334_low_10
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 47151646 - 47151256
Alignment:
| Q |
1 |
gttgccaaaacagaaggtagataactcataaacttagaatctgcaatgttgtgacaaaacctaagatgagaaacagaacacaaaaactttctcaagatcg |
100 |
Q |
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| T |
47151646 |
gttgccaaaacagaaggtagataactcataaacttagaatctgcaatgttgtgacaaaacctaagatgagaaacagaacataaaaactttctcaagatcg |
47151547 |
T |
|
| Q |
101 |
aagatatactgtaaatttacctgatctaatgacagagagaagaacaccttcacatctcttaaggaactcccaacaaattagatgatctttcaatccaagt |
200 |
Q |
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| T |
47151546 |
aagatatactgaaaatttacctgatctaatgacagagagaagaacaccttcacatctcttaagaaactcccaacaaattagatggtctttcaatccaagt |
47151447 |
T |
|
| Q |
201 |
cttcttatgataaaatcaataaaagaaagaggtgttgctggactcatcttccatccaagagttgaaagtatcaaaatttccatctttttaatcgtttttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47151446 |
cttcttatgataaaatcaataaaagaaagaggtgttgctggattcatcttccatccaagagttgaaagtatcaaaatttccatctttttaatcgtttttg |
47151347 |
T |
|
| Q |
301 |
cttcaaacaagtatctactctcttcaacctaaacaaaatttcaaaacaaattagtttagttctttttgtttcttgcaactttgcaagagttaag |
394 |
Q |
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| T |
47151346 |
cttcaaacaagtatctactctcttcaacctaaacaaaatttcaaaacaa---agtttagttctttttgtttcttgcaactttgcaagagttaag |
47151256 |
T |
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