View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_12 (Length: 462)
Name: NF1334_low_12
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 30 - 454
Target Start/End: Complemental strand, 52242749 - 52242325
Alignment:
| Q |
30 |
gctataacaataacaatttcccgccagattttgaatggagagattttatagttattctgaacaacgagagggtattcagttaggatatgatgaagatgag |
129 |
Q |
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| T |
52242749 |
gctataacaataacaatttcccgccagattttgaatggagagattttatagttattctgaacaacgagagggtattcagttaggatatgatgaagatgag |
52242650 |
T |
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| Q |
130 |
agtagtaacaatccgagcacatcacagaggaaatcagacgttgattttaatgatgtgtttgggggaccgccgcggaggaggtcatcggtgagtggaggag |
229 |
Q |
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| T |
52242649 |
agtagtaacaatccgagcacatcacagaggaaatcagacgttgattttaatgatgtgtttgggggaccaccgcggaggaggtcatcggtgagtggaggag |
52242550 |
T |
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| Q |
230 |
aggaaggtgaaacgggttggtgtagttggcctcctccgcctgagagcgagaaaccggtgtttggtgaggatagtggagttaggaggagaagaaaaggaaa |
329 |
Q |
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| T |
52242549 |
aggaaggtgaaacgggttggtgtagttggcctcctccgcctgagagcgagaaaccagtgtttggtgaggatagtggagctaggaggagaagaaaaggaaa |
52242450 |
T |
|
| Q |
330 |
agatttctttgatgatatatttggaggagaagattcacagtctcaaactccaagtgggtgttcaacaccaaagagacgtgatggtgctgctttcagtcct |
429 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52242449 |
agatttttttgatgatatatttggaggagaagattcacagtctcaaactccaagtgggtgttcaacaccaaagagacgtgatggtgctgctttcagtcct |
52242350 |
T |
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| Q |
430 |
gctcttcgaccacttgcttcatctc |
454 |
Q |
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| T |
52242349 |
gctcttcgaccacttgcttcttctc |
52242325 |
T |
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