View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_13 (Length: 441)
Name: NF1334_low_13
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Original strand, 26322887 - 26323287
Alignment:
| Q |
13 |
aatatacttctataatgataactcatacgcgaaagaccattataagtattgaatattttaccatacctttcatatgaaagacatgtttaagaaagtgagt |
112 |
Q |
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| T |
26322887 |
aatatacttctataatgataactcatacgcgaaagaccattataagtattgagtattttaccatacctttcatatgaaagacatgtttaagaaagtgagt |
26322986 |
T |
|
| Q |
113 |
atttgttagtgttcattgatgatattttggcgtacgataatgatcagaatgttttggttattttaattatggactaactttgcctaatactgggtcaaaa |
212 |
Q |
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| T |
26322987 |
atttgttagtgttcattgatgatattttggcgtacgataatgatcagaatgttttggttattttaattatggactaactttgcctaatactgggtcaaaa |
26323086 |
T |
|
| Q |
213 |
tattggaatgtatatctacctctgaccattgcttgatgagattttgaggttttttacaaaaatggctcccaaaataaagttgtttattcttatctagtgc |
312 |
Q |
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| T |
26323087 |
tattggaatgtatatctacctctgaccattgcttgatgagattttgaggttttttacaaaaatggctcctaaaataaagttgtttattcttatccagtgc |
26323186 |
T |
|
| Q |
313 |
agcaaagaattggcattacaggttttggtctctaaaccaaaatctgtagacttaagccaagtacatgaagtcatgaagagaatcaacattactctactta |
412 |
Q |
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| T |
26323187 |
agcaaagaattggcattacaggttttggtctctaaaccaaaatctgtagacttaagccaagtacatgaagtcatgaagagaatcaacattactctactta |
26323286 |
T |
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| Q |
413 |
c |
413 |
Q |
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| T |
26323287 |
c |
26323287 |
T |
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