View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1334_low_14 (Length: 437)
Name: NF1334_low_14
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_14 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 36717361 - 36717765
Alignment:
| Q |
1 |
tatgatgaagagaaaggatcaaacatctttggttgaactttgtgttgagaaagctattgataaaatgtaaaataccttggagatgttagtcatgttgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717361 |
tatgatgaagagaaaggatcaaacatctttggttgatctttgtgttgagaaagctattgataa--tgtaaaataccttggagatgttagtcatgttgatc |
36717458 |
T |
|
| Q |
101 |
aacatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggatttgagccctataagagataa |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36717459 |
atcatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggatttgagccctataactgataa |
36717558 |
T |
|
| Q |
201 |
attgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcag |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36717559 |
attgtggaaaaaattctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcag |
36717658 |
T |
|
| Q |
301 |
ctgtatgaggctaaggtnnnnnnnnntggctcaggttgagaatgaagcagttgatcgacttgcgcaatgctacaaggaagaagatgcaagaaaacaaagc |
400 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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|
| T |
36717659 |
ctgtatgaggctaaggt-aaaaaaaatggctcaggctgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgcaagaaaacaaagc |
36717757 |
T |
|
| Q |
401 |
aggaaaat |
408 |
Q |
| |
|
|||||||| |
|
|
| T |
36717758 |
aggaaaat |
36717765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 1357449 - 1357853
Alignment:
| Q |
1 |
tatgatgaagagaaaggatcaaacatctttggttgaactttgtgttgagaaagctattgataaaatgtaaaataccttggagatgttagtcatgttgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357449 |
tatgatgaagagaaaggatcaaacatgtttggttgatctttgtgttgagaaagctattgataa--tgtaaaataccttggagatgttagtcatgttgatc |
1357546 |
T |
|
| Q |
101 |
aacatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggatttgagccctataagagataa |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | |||||||||||||||||||||||| |||||| |
|
|
| T |
1357547 |
atcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgcatattgagaagtccactcaagggatggatttgagccctataacagataa |
1357646 |
T |
|
| Q |
201 |
attgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcag |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357647 |
attgtggaaaaagttctttgaaaagcaatttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcag |
1357746 |
T |
|
| Q |
301 |
ctgtatgaggctaaggtnnnnnnnnntggctcaggttgagaatgaagcagttgatcgacttgcgcaatgctacaaggaagaagatgcaagaaaacaaagc |
400 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1357747 |
ctgtatgaggctaaggt-caaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgcaagaaaacaaagc |
1357845 |
T |
|
| Q |
401 |
aggaaaat |
408 |
Q |
| |
|
||| |||| |
|
|
| T |
1357846 |
aggcaaat |
1357853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 2041329 - 2040925
Alignment:
| Q |
1 |
tatgatgaagagaaaggatcaaacatctttggttgaactttgtgttgagaaagctattgataaaatgtaaaataccttggagatgttagtcatgttgatc |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2041329 |
tatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaaggtattgataa--tgtaaaataccttggagatgttagtcatgttgatc |
2041232 |
T |
|
| Q |
101 |
aacatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggatttgagccctataagagataa |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | |||||||||||||||||||||||| |||| | |
|
|
| T |
2041231 |
atgatatgcttgagagaatcttgcctcactgcacacttgaccagttgatgcatattgagaagtccactcaagggatggatttgagccctataacagatca |
2041132 |
T |
|
| Q |
201 |
attgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcag |
300 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2041131 |
attgtggagaaagttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcag |
2041032 |
T |
|
| Q |
301 |
ctgtatgaggctaaggtnnnnnnnnntggctcaggttgagaatgaagcagttgatcgacttgcgcaatgctacaaggaagaagatgcaagaaaacaaagc |
400 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2041031 |
ctgtatgaggctaaggt-caaaagagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgcaagaaaacaaagc |
2040933 |
T |
|
| Q |
401 |
aggaaaat |
408 |
Q |
| |
|
|||||||| |
|
|
| T |
2040932 |
aggaaaat |
2040925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 1352328 - 1352719
Alignment:
| Q |
1 |
tatgatgaagagaaaggatcaaacatctttggttgaactttgtgttgagaaagctattgataaaatgtaaaataccttggagatgttagtcatgttgatc |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1352328 |
tatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataa--tgtaaaataccttggagatgttagtcatgttgatc |
1352425 |
T |
|
| Q |
101 |
aacatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggatttgagccctataagagataa |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||| | |
|
|
| T |
1352426 |
atcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgcatattgagaagacaaataaagggatggatttgagccctataacagatca |
1352525 |
T |
|
| Q |
201 |
attgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcag |
300 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1352526 |
attgtggaaaaagttctttgagaagcaatttggtataaattgcactaatgaagtagttaagaagatgaaagaaa-------------cacttggttgcag |
1352612 |
T |
|
| Q |
301 |
ctgtatgaggctaaggtnnnnnnnnntggctcaggttgagaatgaagcagttgatcgacttgcgcaatgctacaaggaagaagatgcaagaaaacaaagc |
400 |
Q |
| |
|
||||||||||||| || |||||| || |||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
1352613 |
ttgtatgaggctaaagt-caaaaaaatggctcgggctgagaatgaagcagttgatcgactcacgaaacgctacaaggaagaagatgcaagaaaacaaagc |
1352711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 50 - 408
Target Start/End: Original strand, 1364328 - 1364670
Alignment:
| Q |
50 |
aaagctattgataaaatgtaaaataccttggagatgttagtcatgttgatcaacatatgcttgagagaatcttgcctcactgcacacttgatcagttgat |
149 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1364328 |
aaagctattgataa--tgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgat |
1364425 |
T |
|
| Q |
150 |
gcatattgagaaggcaagtgaagggatggatttgagccctataagagataaattgtggaaaaagttctttgaaaagcagtttggtataaattgcactaat |
249 |
Q |
| |
|
||||||||||||| | | | |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
1364426 |
gcatattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggaaaaagttctttgagaagcaatttggtataaattgcactaat |
1364525 |
T |
|
| Q |
250 |
gaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtnnnnnnnnntggctcaggttgagaatgaagca |
349 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || |||||| || ||||||||||||| |
|
|
| T |
1364526 |
gaagtagttaagaagatgaaagaaa-------------cacttggttgcagttgtatgaggctaaagt-caaaaaaatggctcgggctgagaatgaagca |
1364611 |
T |
|
| Q |
350 |
gttgatcgacttgcgcaatgctacaaggaagaagatgcaagaaaacaaagcaggaaaat |
408 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1364612 |
gttgatcgactcacgcaacgctacaaggaagaagatgcaagaaaacaaagcaggcaaat |
1364670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 7e-96; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 2 - 298
Target Start/End: Complemental strand, 24620630 - 24620337
Alignment:
| Q |
2 |
atgatgaagagaaaggatcaaacatctttggttgaactttgtgttgagaaagctattgataaaatgtaaaataccttggagatgttagtcatgttgatca |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24620630 |
atgatgaagagaaaggatcaaacatatttggttgatctttgtgttgagaaagctattgataa--tgtaaaataccttggagatgttagtcatgttgatca |
24620533 |
T |
|
| Q |
102 |
acatatgcttgagagaatcttgcctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggatttgagccctataagagataaa |
201 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||| | |||| ||||||||||||||| |||| ||||| |
|
|
| T |
24620532 |
tcatatgcttgagtgaatcttgcctcactgcacacttgaccggaacatgcatattgagaaggccaatgaa-ggatggatttgagccatatatcgaataaa |
24620434 |
T |
|
| Q |
202 |
ttgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgc |
298 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
24620433 |
ctgtggaaaaagtttattgaaaagcagtttggtataatttgcacaaatgaagtagttaaggatatgaaagaaaaaatagtttcattcacatggttgc |
24620337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 172 - 310
Target Start/End: Complemental strand, 18180026 - 18179888
Alignment:
| Q |
172 |
gggatggatttgagccctataagagataaattgtggaaaaagttctttgaaaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaag |
271 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || ||| || ||||| || |
|
|
| T |
18180026 |
gggatggatttgagcccggtaacagataaattgtggaaaaagttctttgaaaagcagtttggtataagttgcacaaatgaaataattaggaggatgacag |
18179927 |
T |
|
| Q |
272 |
aaaaaagagtttcattcacttggttgcagctgtatgagg |
310 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
18179926 |
aaaaaagagtgtcattcagatggttgcagttgtatgagg |
18179888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 329 - 408
Target Start/End: Complemental strand, 24619936 - 24619857
Alignment:
| Q |
329 |
gctcaggttgagaatgaagcagttgatcgacttgcgcaatgctacaaggaagaagatgcaagaaaacaaagcaggaaaat |
408 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24619936 |
gctcaggttaaaaatgaagcagttgatcgacccacgcaatgctaaaaggaagaagatgcaagaaaacaaagcaggaaaat |
24619857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 18180255 - 18180117
Alignment:
| Q |
24 |
catctttggttgaactttgtgttgagaaagctattgataaaatgtaaaataccttggagatgttagtcatgttgatcaacatatgcttgagagaatcttg |
123 |
Q |
| |
|
||||| ||||||| ||||||||| | | |||||| ||||| | ||| |||||||||| ||||| ||| ||||||||| ||| ||||||| |||||||| |
|
|
| T |
18180255 |
catctctggttgatctttgtgttcaaacagctatagataa--tttaagataccttggaaatgttggtcctgttgatcatcatctgcttgaacgaatcttg |
18180158 |
T |
|
| Q |
124 |
cctcactgcacacttgatcagttgatgcatattgagaaggc |
164 |
Q |
| |
|
|| |||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
18180157 |
ccacactgcacacttgaccagttgacgcatatcgagaaggc |
18180117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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