View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_15 (Length: 415)
Name: NF1334_low_15
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_15 |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0048 (3 HSPs) |
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Alignment Details
Target: scaffold0185 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 7181 - 6826
Alignment:
| Q |
16 |
attccaaatagtttcccaaaaaacaccgtaaatactaagcttatgagaaccaaagaaattgcataaaactcaaaattcttttgtttctctaatattggtc |
115 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||| | |
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| T |
7181 |
attccaaatagtttcccaaaacacaccgtaaatactaagcttatgagaaccaaccacattgcataaaactcaaacttcttttgcttctctaatattgcgc |
7082 |
T |
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| Q |
116 |
ttcctcgaagaggttctttctcatgttttgctttggtggacatgatctttgattgtgataactttggactgtctgaagataaacttgtcaaagacgattg |
215 |
Q |
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| T |
7081 |
ttcctcggctagtttctttctcatgttttcctttggtggacattttctttggttgtgataactttggactatctgaagataaagttgtcaaagacgattg |
6982 |
T |
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| Q |
216 |
agtggcgttggttactttcttatacgtcgaataattatgctttgacacaccaaaacaatcaaagccgtaacaagttttatgacgagctcttttattctgc |
315 |
Q |
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| T |
6981 |
agtggctttggttactttcttatacgtcgaataattatgctttgacacaccaaaaaaatcaaagccgtaacaagttttatgacgagctcttctattctgc |
6882 |
T |
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| Q |
316 |
aagacgaagatattaaaagttaatgatcaaaaactttgtgctgtaaaaaggaaatg |
371 |
Q |
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| T |
6881 |
aagaataagatgttaaaagttaatgatcaaaaactttgtgctataaaaaggaaatg |
6826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 85314 - 85684
Alignment:
| Q |
16 |
attccaaatagtttcccaaaaaacaccgtaaatactaagcttatgagaaccaaagaaattgcataaaactcaaaattcttttgtttctctaatattggtc |
115 |
Q |
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| T |
85314 |
attccaaatagtttcccgaaaaacacagtaaatactaagcttattagaaccaaacaaattgcacgaaactcaaacttcttttgtttctctaatattgcgc |
85413 |
T |
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| Q |
116 |
ttcctcgaagaggttctttctcatgttttgctttggtggacatgatctttgattgtgataactttggactgtctgaagataaacttgtcaaagacgattg |
215 |
Q |
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|| || | || |||||||||||||||| |||||||||||||| ||||||||||||||| | ||| | | ||||||||||||||||||||||||||||| |
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| T |
85414 |
tttcttgtttagtttctttctcatgttttcctttggtggacatgttctttgattgtgataccgttgaattatctgaagataaacttgtcaaagacgattg |
85513 |
T |
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| Q |
216 |
agtggcgttggttactttcttatacgtcgaataattatgctttgacacaccaaaacaatcaaagccgtaacaagttttatgacgagctcttttattctgc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
85514 |
agtggcgttggttactttcttatacgtcgaataattatgctttgacacaccaaaacaatcaaagccgtaacaagttttatgacgagctcttctattctgc |
85613 |
T |
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| Q |
316 |
aagacgaagatattaaaagttaatgatcaaaaactttgtgctgtaaaaaggaaatgaaattaattcctata |
386 |
Q |
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| T |
85614 |
aagaattagatattaaaagtcaacgatcaaaaactttgtgctataaaaatgaaatgaaattaattcatata |
85684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 47923 - 47561
Alignment:
| Q |
13 |
aatattccaaatagtttcccaaaaaacaccgtaaatactaagcttatgagaaccaaagaaattgcataaaactcaaaattcttttgtttctctaatattg |
112 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
47923 |
aatattccaaatagtttcccaaaaaacaccataaatactaatcttatgagaaccaaacaaattgcatgaaactcaaacttcttttatttctctaatattg |
47824 |
T |
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| Q |
113 |
gtcttcctcgaagaggttctttctcatgttttgctttggtggacatgatctttgattgtgataactttggactgtctgaagataaacttgtcaaagacga |
212 |
Q |
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| T |
47823 |
cgcttcttcggctagtatctttctcatgttttcctttggtggacgtgatctttgattgtgatacctttgaactatctgaagataaagttgacaaagacga |
47724 |
T |
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| Q |
213 |
ttgagtggcgttggttactttcttatacgtcgaataattatgctttgacacaccaaaac----aatcaaagccgtaacaagttttatgacgagctctttt |
308 |
Q |
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||| || || ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
47723 |
ttgcgtagctttggttactttcttatacgtcgaataaatattttttgacacaccaaaacaattaatcaaagccgtaacaagttttatgacgagctcttct |
47624 |
T |
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| Q |
309 |
attctgcaagacgaagatattaaaagttaatgatcaaaaactttgtgctgtaaaaaggaaatg |
371 |
Q |
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| T |
47623 |
attctgcaagacaaagatattaaaagttaatgatcaaaaactttgtgctataaaaaggaaatg |
47561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 60521 - 60170
Alignment:
| Q |
19 |
ccaaatagtttcccaaaaaacaccgtaaatactaagcttatgagaaccaaagaaattgcataaaactcaaaattcttttgtttctctaatattggtcttc |
118 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |
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| T |
60521 |
ccaaatattttcccaaaaaacacagtaaatactaagcttatgagtaccaaagaaattgcataaaactcaaaattcttttgcttctctattattgtgcttc |
60422 |
T |
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| Q |
119 |
ctcgaagaggttctttctcatgttttgctttggtggacatgatctttgattgtgataactttggactgtctgaagataaacttgtcaaagacgattgagt |
218 |
Q |
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|||| || |||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||| | |||||||||||||| ||| |
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| T |
60421 |
ctcggcaagtatctttctcttgttttcctttggtggacatgatctttgattgtgatacctttgaactatctgaagatatagctgtcaaagacgattcagt |
60322 |
T |
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| Q |
219 |
ggcgttggttactttcttatacgtcgaataattatgctttgacacaccaaaacaatcaaagccgtaacaagttttatgacgagctcttttattctgcaag |
318 |
Q |
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|| |||| ||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
60321 |
agctttggctactttcttatacgttgaataaatattttttgacacaccaaaacaatcaaagccgtaacaagttttatgacgagctcttctattctgcaag |
60222 |
T |
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| Q |
319 |
acgaagatattaaaagttaatgatcaaaaactttgtgctgtaaaaaggaaatg |
371 |
Q |
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|| ||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
60221 |
acaaagatattaaaagttaatgatcaaaaactttgt-ttataaaaaggaaatg |
60170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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