View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_19 (Length: 391)
Name: NF1334_low_19
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 34865441 - 34865096
Alignment:
| Q |
17 |
tattgatatagagaaattaatgaaaatgaatcacaagaaaggaataaagtaatgccattgtttaaatattttaacaatgaaatgaaaaatatgactctca |
116 |
Q |
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| T |
34865441 |
tattgatatagagaaattaatgaaaatgaatcacaagaaaggaataaagtaatgccattgtttaaatattttaacaatgaaatgaaaaatatgactctca |
34865342 |
T |
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| Q |
117 |
ccaatttcaaatgaaaatactaataannnnnnnnnggaaaaattacactcacctccccttaagtttgtgtaaatataacggacaccccctctattttctc |
216 |
Q |
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| T |
34865341 |
ccaatttcaaatgaaaataataataatttttttttgtgaaaattacactcacctccccttaaatttgtgtaaatataacggacaccccctctattttctc |
34865242 |
T |
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| Q |
217 |
aattgtcaacaacaacccctgtcgttatatctccatccaataccgttagcatatacttttctaatattcgttttcgctccatgaatccattcatcgttaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34865241 |
aattgtcaacaacaacccctgtcgttatatctccatccaataccgttagtatatacttttctaatattcgttttcgctccatgaatccattcatcgttaa |
34865142 |
T |
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| Q |
317 |
tagatataagtacctatttatccatctccttagtttcgaatggtta |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34865141 |
tagatataagtacctatttatccatctccttagtttcgaatggtta |
34865096 |
T |
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