View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_21 (Length: 375)
Name: NF1334_low_21
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_21 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 109 - 375
Target Start/End: Original strand, 40093267 - 40093533
Alignment:
| Q |
109 |
gatttctctcattactatatctaacatgaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatat |
208 |
Q |
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| T |
40093267 |
gatttctctcattactatatctaacatgaaccatatacacatcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatat |
40093366 |
T |
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| Q |
209 |
tgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtc |
308 |
Q |
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| T |
40093367 |
tgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtc |
40093466 |
T |
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| Q |
309 |
ttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctc |
375 |
Q |
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| T |
40093467 |
ttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctc |
40093533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 109 - 372
Target Start/End: Original strand, 40062610 - 40062899
Alignment:
| Q |
109 |
gatttctctcattactatatctaa-----catgaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagt |
203 |
Q |
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| T |
40062610 |
gatttctctcattactatatctaagctaacatgaaccatatgcacatcagaactatggagctttttttgacagatggggagcggggatcaccggtccagt |
40062709 |
T |
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| Q |
204 |
gatattgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtcttcactt------------ttgatcg |
291 |
Q |
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| T |
40062710 |
aacattgaaaggtttgaagaatggcaacaacactcttgatctctcctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagacttgatca |
40062809 |
T |
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| Q |
292 |
aagactatttattagtctta---------catagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtct |
372 |
Q |
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| T |
40062810 |
aagactatttattagtcttaatggagattgattgttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtct |
40062899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 109 - 310
Target Start/End: Original strand, 40080959 - 40081166
Alignment:
| Q |
109 |
gatttctctcattactatatctaac-----atgaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagt |
203 |
Q |
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| T |
40080959 |
gatttctctcattactatatctaagctaatatgaaccatatacacatcagaactatggagccttttttgacacagtgggagcagggatcaccggtcccgt |
40081058 |
T |
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| Q |
204 |
gatattgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtctt-cacttttgatcgaagactattta |
302 |
Q |
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| T |
40081059 |
gatattgaaaggtttgaagaatggcaacaacactcttgatctctcctctcggaagtggacatatcaggtcaatcttaaatttttgatcgaaaactattta |
40081158 |
T |
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| Q |
303 |
ttagtctt |
310 |
Q |
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| T |
40081159 |
ttattctt |
40081166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 40081187 - 40081249
Alignment:
| Q |
310 |
tacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtct |
372 |
Q |
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| T |
40081187 |
tacattgttaatggagttaattttttcgatacagattggcctaaaaggcgaagatttaggtct |
40081249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 44006216 - 44006303
Alignment:
| Q |
20 |
tgtctatagtaatcggatgtttttctttgnnnnnnnctacaaccaaatgttattatgaaagtgatcaattgtcctgtctaaagtaaca |
107 |
Q |
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| T |
44006216 |
tgtctatagtaatcggatgtttttctttgaaaaaaactacaaccaaatgttattatgaaagtgatcaattgtcctgtctaaagtaaca |
44006303 |
T |
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