View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_23 (Length: 351)
Name: NF1334_low_23
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 54984773 - 54984444
Alignment:
| Q |
9 |
caacaatatctatcctcggtgagaaaatcatagaaagatacagcacatccattttgtggtgtacttcagaagccacaacacacattttatttggttttca |
108 |
Q |
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| T |
54984773 |
caacaatatctatcctcggcgagaaaattatagaaagatacagcacttccattttgtggtgtacttcagaagccacaacacacattttatttggttttca |
54984674 |
T |
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| Q |
109 |
ttctcttacatttcacaatttgnnnnnnncaacaataaatttattaatgatcaaatctttgcacacaacgaactaaaactggaaagacaaaaagtacata |
208 |
Q |
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| T |
54984673 |
ttctcttacatttcacaatttgttttttt-aacaataaatttattaatgatcaaatctttgcatacgacgaactaaaactggaaagataaaaagtacata |
54984575 |
T |
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| Q |
209 |
acaacttgcaccaaaggaggagcatccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggtaccaccaacacg |
308 |
Q |
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| T |
54984574 |
acaacttgcgccaaaggaggagcatccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggtaccaccaacacg |
54984475 |
T |
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| Q |
309 |
aataaaaacaaaacctccaaacctaaagcca |
339 |
Q |
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| T |
54984474 |
aataaaaacaaaacctccaaacctaaagcca |
54984444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 51065490 - 51065545
Alignment:
| Q |
231 |
catccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactca |
287 |
Q |
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| T |
51065490 |
catccaaaagaaaattcaaacaccatgcaatataaacactgat-aaaacacgactca |
51065545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 31320213 - 31320256
Alignment:
| Q |
82 |
cacaacacacattttatttggttttcattctcttacatttcaca |
125 |
Q |
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| T |
31320213 |
cacaacacacattttatttcgttttcattctctttcatctcaca |
31320256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 31326250 - 31326283
Alignment:
| Q |
82 |
cacaacacacattttatttggttttcattctctt |
115 |
Q |
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| T |
31326250 |
cacaacacacattttatttcgttttcattctctt |
31326283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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