View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_27 (Length: 331)
Name: NF1334_low_27
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 27195264 - 27194974
Alignment:
| Q |
30 |
ataataacaaaaggaacatactacatgatacagagtaaagttagtagcttacttcatttccatcggatgatattacaaagtcacgggaacgaaaggccaa |
129 |
Q |
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| T |
27195264 |
ataataacaaaaggaacctactacatgatacagagtaaagttagtagcttacttcatttccatcggatgatatcagaaagtcacgggaacgagaggccaa |
27195165 |
T |
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| Q |
130 |
tatcgatctcaaggactggttcctcttagcttcctcttctatatctttcaactcttgaaccctttttgatgtgaaagggtatgcttcagctccataaaca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27195164 |
tatcgatctcaaggactggttcctcttagcttcctcttctatatctttcaactcttgaaccctttttgatgtgaaagggtatgcttcagctccataaaca |
27195065 |
T |
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| Q |
230 |
cggataatgtcaactccatcttcagtaataacttttccagcttcatcaagcaatgcaagatgaggaattccttttacatgaaacagttcat |
320 |
Q |
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| T |
27195064 |
cggataatgtcaactccatcttcagtaataacttttccagcttcatcaagcaatgcaagatgaggaattccgttgacatgaaacaattcat |
27194974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 30 - 314
Target Start/End: Complemental strand, 27210493 - 27210209
Alignment:
| Q |
30 |
ataataacaaaaggaacatactacatgatacagagtaaagttagtagcttacttcatttccatcggatgatattacaaagtcacgggaacgaaaggccaa |
129 |
Q |
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|||||||| ||| |||| ||||| || |||| |||| |||||| | ||||||||| |||| |||||||||||| |||||||||||| | | | || |||| |
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| T |
27210493 |
ataataactaaacgaacctactatatcatactgagttaagttattcgcttacttcgtttctatcggatgatatcacaaagtcacggtagctagagaccaa |
27210394 |
T |
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| Q |
130 |
tatcgatctcaaggactggttcctcttagcttcctcttctatatctttcaactcttgaaccctttttgatgtgaaagggtatgcttcagctccataaaca |
229 |
Q |
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| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| || |
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| T |
27210393 |
tgtcgatctcaaggactggttcctcatagcttcctcttctatatctttcaactcttgaaccttttttgatgtgaaagggtatccttcagttccatattca |
27210294 |
T |
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| Q |
230 |
cggataatgtcaactccatcttcagtaataacttttccagcttcatcaagcaatgcaagatgaggaattccttttacatgaaaca |
314 |
Q |
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|||||||||| |||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
27210293 |
cggataatgtgaactccgtcttcagtaacaacttttccagtatcatcgagcaatgcaagatgaggaatgccttttacatgaaaca |
27210209 |
T |
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