View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1334_low_28 (Length: 328)

Name: NF1334_low_28
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1334_low_28
NF1334_low_28
[»] chr4 (5 HSPs)
chr4 (1-283)||(44589427-44589710)
chr4 (152-231)||(43982081-43982159)
chr4 (168-239)||(38341164-38341235)
chr4 (152-235)||(9641223-9641308)
chr4 (153-235)||(9626531-9626615)
[»] chr7 (2 HSPs)
chr7 (151-226)||(3818764-3818839)
chr7 (152-232)||(33422586-33422665)
[»] chr1 (3 HSPs)
chr1 (287-322)||(45924490-45924525)
chr1 (287-322)||(45936438-45936473)
chr1 (152-235)||(4088185-4088268)
[»] chr8 (2 HSPs)
chr8 (185-221)||(16932989-16933025)
chr8 (167-232)||(27342947-27343014)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 44589710 - 44589427
Alignment:
Q  1 tacaaaaataaagaagagtgttacctattagatatagttagtgaggttatttgtgttacaagtaacagtgtagttagttgagaatgtgttataaacataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44589710 tacaaaaataaagaagagtgttacctattagatatagttagtgaggttatttgtgttacaagtaacagtgtagttagttgagaatgtgttataaacataa 44589611  T
Q  101 atatcatgcctatac-nnnnnnnnaaggatgcctatagaagnnnnnnnnnttcatccctaattactgctattgttactattcatgttttccttcataagt 199  Q
    |||||||||||||||         ||||||||||||||||           ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44589610 atatcatgcctatactttttttttaaggatgcctatagaaagaaaaaaaaatcatccctaattactgctattgttactattcttgttttccttcataagt 44589511  T
Q  200 ctaatattactattatattcatctgata-tttttatttatacannnnnnngttcttttaagaataacaactaatttctagcattt 283  Q
    |||||||||||||||||||||||||||| |||||||||||| |       |||||||||| ||||| ||||||||||||||||||    
T  44589510 ctaatattactattatattcatctgatattttttatttatata-atttttgttcttttaacaataataactaatttctagcattt 44589427  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 43982081 - 43982159
Alignment:
Q  152 catccctaattactgctattgttactattcatgttttccttcataagtctaatattactattatattcatctgatatttt 231  Q
    |||| ||||||| ||||  |||||||||| || |||||||||||||||||| |||||||||||||||||| |||||||||    
T  43982081 catctctaattagtgctgctgttactatt-attttttccttcataagtctattattactattatattcatttgatatttt 43982159  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 38341235 - 38341164
Alignment:
Q  168 tattgttactattcatgttttcctt-cataagtctaatattactattatattcatctgatatttttatttata 239  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||||| |||| || |||| ||||||||||||    
T  38341235 tattgttactatt-atgttttcctttcataagtctattattactattctattaatttgatctttttatttata 38341164  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 9641308 - 9641223
Alignment:
Q  152 catccctaattactgctattgttactattcatgtttt--ccttcataagtctaatattactattatattcatctgatatttttatt 235  Q
    |||||||||||| ||||||| ||||||||  | ||||  ||||||||||||||  |||| |||||||||||| || | ||||||||    
T  9641308 catccctaattaatgctattattactattattttttttcccttcataagtctataattaatattatattcatttgttctttttatt 9641223  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 9626615 - 9626531
Alignment:
Q  153 atccctaattactgctattgttactattcatgtttt--ccttcataagtctaatattactattatattcatctgatatttttatt 235  Q
    ||||||||||||||| | | ||||||||  | ||||  |||||||||||||| ||||| |||||||||||| || | ||||||||    
T  9626615 atccctaattactgccactattactattattttttttcccttcataagtctattattaatattatattcatttgttttttttatt 9626531  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 3818839 - 3818764
Alignment:
Q  151 tcatccctaattactgctattgttactattcatgttttccttcataagtctaatattactattatattcatctgat 226  Q
    ||||||||||||||||||| | ||||||||  |||||| ||||||||||||| || |||||||||| |||| ||||    
T  3818839 tcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat 3818764  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 33422665 - 33422586
Alignment:
Q  152 catccctaattactgctattgttactattcatgttttccttcataagtctaatattactattatattcatctgatattttt 232  Q
    |||||||| ||||||||| | ||||||||  | ||  |||||||||||||| ||||| |||||||||||| |||| |||||    
T  33422665 catccctatttactgctactattactattatttttccccttcataagtctactatta-tattatattcatttgattttttt 33422586  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 45924490 - 45924525
Alignment:
Q  287 gatgatgttttccctggtcttgttatcagaattatc 322  Q
    ||||||||||||||||||||||||||||||||||||    
T  45924490 gatgatgttttccctggtcttgttatcagaattatc 45924525  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 45936438 - 45936473
Alignment:
Q  287 gatgatgttttccctggtcttgttatcagaattatc 322  Q
    ||||||||||||||||||||||||||||||||||||    
T  45936438 gatgatgttttccctggtcttgttatcagaattatc 45936473  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 4088268 - 4088185
Alignment:
Q  152 catccctaattactgctattgttactattcatgttttc-cttcataagtctaatattactattatattcatctgatatttttatt 235  Q
    ||||||||||||||  || | |||||||| || ||||| ||||||||||||| | ||||||||||||| || |||| ||||||||    
T  4088268 catccctaattactcttactattactatt-attttttctcttcataagtctactgttactattatatttatttgatctttttatt 4088185  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 16933025 - 16932989
Alignment:
Q  185 ttttccttcataagtctaatattactattatattcat 221  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  16933025 ttttccttcataagtctattattactgttatattcat 16932989  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 27343014 - 27342947
Alignment:
Q  167 ctattgttactattcatgttttccttcataagtctaatattac--tattatattcatctgatattttt 232  Q
    ||||||||||||||  |||||| ||||||||||| | ||||||  ||||||| |||| ||||||||||    
T  27343014 ctattgttactattattgtttttcttcataagtcgactattactatattatactcatttgatattttt 27342947  T

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