View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1334_low_30 (Length: 322)

Name: NF1334_low_30
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1334_low_30
NF1334_low_30
[»] chr2 (5 HSPs)
chr2 (30-312)||(17884359-17884641)
chr2 (83-251)||(17862579-17862745)
chr2 (83-225)||(24047551-24047690)
chr2 (44-85)||(17862036-17862079)
chr2 (147-187)||(39730680-39730720)
[»] chr6 (3 HSPs)
chr6 (86-242)||(16439630-16439784)
chr6 (86-186)||(23418952-23419052)
chr6 (85-225)||(26499653-26499790)
[»] chr1 (4 HSPs)
chr1 (91-187)||(31313729-31313825)
chr1 (83-141)||(26102226-26102284)
chr1 (85-187)||(27461022-27461124)
chr1 (113-183)||(34935181-34935251)
[»] chr5 (5 HSPs)
chr5 (91-212)||(17695281-17695400)
chr5 (91-188)||(11997733-11997830)
chr5 (158-225)||(20694886-20694951)
chr5 (147-187)||(24846460-24846500)
chr5 (83-187)||(26070643-26070747)
[»] chr4 (1 HSPs)
chr4 (91-187)||(53001019-53001115)
[»] chr8 (2 HSPs)
chr8 (85-220)||(5153929-5154062)
chr8 (263-311)||(12021432-12021480)
[»] chr7 (3 HSPs)
chr7 (114-188)||(19139823-19139896)
chr7 (114-188)||(20739222-20739295)
chr7 (91-139)||(29544697-29544745)
[»] chr3 (1 HSPs)
chr3 (83-139)||(19219100-19219156)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 17884641 - 17884359
Alignment:
Q  30 ggggttatagttataatactcaccttacacatcatatgcaccaatcacttgagcaaggatgtgaagaatgaagatcattgatccttagaaggtttttgaa 129  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  17884641 ggggttacaattataatactcaccttacacatcatatgcaccaatcacttgagcaaggatatgaagaatgaagatcattgattcttagaaggtttttgaa 17884542  T
Q  130 aactatacaagtcagacaaaattcatcccaagttctaagacattttaagacggaagaaaacgctcgaaacatggacgaaaactgcaaaattggcactgga 229  Q
    ||||||||||  | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  17884541 aactatacaaaccggagaaaattcatcccaagttctaagacattttaagacggaagaaaacgctcgaaacatggacgaaaattgcaaaattcgcactgga 17884442  T
Q  230 gctactgcctcatacgcccctgcacatgagagtcttataatccgtatgctaattgtggttaccttctcattacctggttcatc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17884441 gctactgcctcatacgcccctgcacatgagagtcttataatccgtatgcgaattgtggttaccttctcattacctggttcatc 17884359  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 251
Target Start/End: Original strand, 17862579 - 17862745
Alignment:
Q  83 caaggatgtgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacgg 182  Q
    ||||||| ||||||||||| |||  || | |||||||  |||||||| ||  |||||||  |  |||||||||||||||||| ||||||||| | | |||    
T  17862579 caaggatatgaagaatgaaaatcggtggttcttagaatttttttgaagacagtacaagttggggaaaattcatcccaagttccaagacatttcatggcgg 17862678  T
Q  183 aagaaaacgctcgaaacatggacgaaaactgcaaaattggcactggagctactgcctcatacgcccctg 251  Q
    ||  |||||||||||| | |||| |||||||||||||| ||||| ||| ||||||||||  ||||||||    
T  17862679 aa--aaacgctcgaaaaagggacaaaaactgcaaaatttgcactagagttactgcctcaggcgcccctg 17862745  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 24047551 - 24047690
Alignment:
Q  83 caaggatgtgaagaatgaagatcattgatcct-tagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacg 181  Q
    ||||||| |||||||||||||||| || | ||  | ||||||| |||| || |||||||| ||  |||||||| ||||||||| ||| ||||| |||| |    
T  24047551 caaggatatgaagaatgaagatcaatggttctcaaaaaggtttgtgaagacaatacaagttagggaaaattcaacccaagttccaaggcatttcaagatg 24047650  T
Q  182 gaagaaaacgctcgaaacatggacgaaaactgcaaaattggcac 225  Q
    ||  ||||||||||||| | |||| |||||||||||||| ||||    
T  24047651 ga--aaaacgctcgaaa-aaggac-aaaactgcaaaattcgcac 24047690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 17862036 - 17862079
Alignment:
Q  44 aatactcaccttacacatc--atatgcaccaatcacttgagcaa 85  Q
    |||||||||||||||||||  ||||||||||| |||||||||||    
T  17862036 aatactcaccttacacatcatatatgcaccaaccacttgagcaa 17862079  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 39730680 - 39730720
Alignment:
Q  147 aaaattcatcccaagttctaagacattttaagacggaagaa 187  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  39730680 aaaattcatcccaagttccaaggcatttcaagacggaagaa 39730720  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 242
Target Start/End: Original strand, 16439630 - 16439784
Alignment:
Q  86 ggatgtgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacggaag 185  Q
    |||| |||||||||||||||| || | ||||||| | ||||||| |  ||||||||  |  |||||||||| |||| || ||||||||||||||||||||    
T  16439630 ggatatgaagaatgaagatcaatggttcttagaatggttttgaagaaaatacaagttcgggaaaattcatcgcaagatccaagacattttaagacggaag 16439729  T
Q  186 aaaacgctcgaaacatggacgaaaactgcaaaattggcactggagctactgcctcat 242  Q
      ||||||||||| | ||| ||| |||||||| || ||||  |||||||||||||||    
T  16439730 --aacgctcgaaaaagggaggaatactgcaaagttcgcacatgagctactgcctcat 16439784  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 23419052 - 23418952
Alignment:
Q  86 ggatgtgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacggaag 185  Q
    |||| ||||||||||| |||| || | | |||||||||||||||  | ||||||||   | ||||||||||| |||||| ||  ||||||||||||||||    
T  23419052 ggatttgaagaatgaatatcaatgttacgtagaaggtttttgaagtcaatacaagttgaagaaaattcatccaaagttccaacgcattttaagacggaag 23418953  T
Q  186 a 186  Q
    |    
T  23418952 a 23418952  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 26499790 - 26499653
Alignment:
Q  85 aggatgtgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacggaa 184  Q
    ||||| |||||| ||||||||| || | ||||||||||||||||| || ||||||   | | |||||||||  ||||||  ||| ||||  ||||||||     
T  26499790 aggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaatacaaagtaaagaaaattcatttcaagtttcaaggcattgcaagacgga- 26499692  T
Q  185 gaaaacgctcgaaacatggacgaaaactgcaaaattggcac 225  Q
     | ||||||||||| | | ||||||||||||||||| ||||    
T  26499691 -acaacgctcgaaa-aagaacgaaaactgcaaaatttgcac 26499653  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 31313729 - 31313825
Alignment:
Q  91 tgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacggaagaa 187  Q
    |||||||||||||||| |||| |||| |||||||||||| || |||||||| ||  |||||| |||| |||||| ||| ||||| ||||||||||||    
T  31313729 tgaagaatgaagatcaatgattcttataaggtttttgaagacaatacaagttaggaaaaattaatcctaagttccaaggcatttcaagacggaagaa 31313825  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 26102226 - 26102284
Alignment:
Q  83 caaggatgtgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagt 141  Q
    ||||||| |||||||||||||||| ||||  |||||||||||||||| || ||||||||    
T  26102226 caaggatatgaagaatgaagatcaatgatttttagaaggtttttgaagacaatacaagt 26102284  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 27461124 - 27461022
Alignment:
Q  85 aggatgtgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacggaa 184  Q
    ||||| ||||| |||||||||| || | |||| |||||||||||| || ||||||||  |  || ||||||| ||||||| ||| ||||| |||||| ||    
T  27461124 aggatatgaagtatgaagatcaatggttcttaaaaggtttttgaagacaatacaagtttgggaatattcatcacaagttccaaggcatttcaagacgaaa 27461025  T
Q  185 gaa 187  Q
    |||    
T  27461024 gaa 27461022  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 34935251 - 34935181
Alignment:
Q  113 cttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacgga 183  Q
    |||| |||||||||||| |  ||||||||  |  |||||||||||||||||||||| ||||| ||||||||    
T  34935251 cttataaggtttttgaagataatacaagttggggaaaattcatcccaagttctaaggcatttcaagacgga 34935181  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 17695400 - 17695281
Alignment:
Q  91 tgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacggaagaaaac 190  Q
    |||| ||||||||||| || |  |||||||||||||||| || ||||||||  |  ||||||||||| |||||| ||| ||||| ||||| ||||  |||    
T  17695400 tgaataatgaagatcaatggttattagaaggtttttgaagacaatacaagttggggaaaattcatcctaagttccaaggcatttcaagaccgaag--aac 17695303  T
Q  191 gctcgaaacatggacgaaaact 212  Q
    |||||||| | |||||||||||    
T  17695302 gctcgaaaaagggacgaaaact 17695281  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 11997830 - 11997733
Alignment:
Q  91 tgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacggaagaaa 188  Q
    |||||||||||||||| ||||  ||||||||||||| || |  ||||||||  || |||||||||||||||||| |||  | || |||||||||||||    
T  11997830 tgaagaatgaagatcaatgatttttagaaggtttttaaagataatacaagttggaaaaaattcatcccaagttcaaaggtaattcaagacggaagaaa 11997733  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 20694886 - 20694951
Alignment:
Q  158 caagttctaagacattttaagacggaagaaaacgctcgaaacatggacgaaaactgcaaaattggcac 225  Q
    ||||||||||| ||||  | ||||||||||  ||||||||| | ||||||||||||||||||| ||||    
T  20694886 caagttctaagccattgcacgacggaagaa--cgctcgaaaaagggacgaaaactgcaaaattcgcac 20694951  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 24846460 - 24846500
Alignment:
Q  147 aaaattcatcccaagttctaagacattttaagacggaagaa 187  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  24846460 aaaattcatcccaagttccaaggtattttaagacggaagaa 24846500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 26070643 - 26070747
Alignment:
Q  83 caaggatgtgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacgg 182  Q
    ||||||| |||||| ||||||||  || | | || |||||||||||| || || ||||| ||| ||||||||   ||||||| ||| ||||| |||||||    
T  26070643 caaggatatgaagattgaagatctatggttcgtataaggtttttgaagacaatgcaagttagagaaaattcagttcaagttccaaggcatttcaagacgg 26070742  T
Q  183 aagaa 187  Q
    |||||    
T  26070743 aagaa 26070747  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 53001115 - 53001019
Alignment:
Q  91 tgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagtc-agacaaaattcatcccaagttctaagacattttaagacggaagaa 187  Q
    ||||||||| |||||| |||| ||||||||| ||||||| || |||| |||  ||| |||||| ||| ||| |||||||||||||||||| |||||||    
T  53001115 tgaagaatggagatcaatgatacttagaaggcttttgaagacaatactagttgaga-aaaattaatctcaaattctaagacattttaagatggaagaa 53001019  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 5153929 - 5154062
Alignment:
Q  85 aggatgtgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacggaa 184  Q
    ||||| |||||| ||||||||| ||||  || ||||||||||||| || ||| ||     | |||||||||  ||||||| ||||||||  |||||||||    
T  5153929 aggatatgaagattgaagatcaatgattattggaaggtttttgaagacaatataacatgaataaaattcatttcaagttccaagacattgcaagacggaa 5154028  T
Q  185 gaaaacgctcgaaacatggacgaaaactgcaaaatt 220  Q
    |||   |||||||| | |||||||||||||||||||    
T  5154029 gaat--gctcgaaaaagggacgaaaactgcaaaatt 5154062  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 12021480 - 12021432
Alignment:
Q  263 cttataatccgtatgctaattgtggttaccttctcattacctggttcat 311  Q
    |||||||||| ||| | ||||| ||||||||||||||||||||||||||    
T  12021480 cttataatccttatacgaattgcggttaccttctcattacctggttcat 12021432  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 19139896 - 19139823
Alignment:
Q  114 ttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacggaagaaa 188  Q
    ||||||| | |||||| || |||||||| ||  |||||||||||||||||| |||  ||||||||||||||||||    
T  19139896 ttagaagatatttgaagacaatacaagttagctaaaattcatcccaagttc-aaggaattttaagacggaagaaa 19139823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 20739295 - 20739222
Alignment:
Q  114 ttagaaggtttttgaaaactatacaagtcagacaaaattcatcccaagttctaagacattttaagacggaagaaa 188  Q
    ||||||| | |||||| || |||||||| ||  |||||||||||||||||| |||  ||||||||||||||||||    
T  20739295 ttagaagatatttgaagacaatacaagttagctaaaattcatcccaagttc-aaggaattttaagacggaagaaa 20739222  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 29544697 - 29544745
Alignment:
Q  91 tgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaa 139  Q
    |||||| ||||||||| |||| ||||||||||||||||| || ||||||    
T  29544697 tgaagattgaagatcaatgattcttagaaggtttttgaagacaatacaa 29544745  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 19219156 - 19219100
Alignment:
Q  83 caaggatgtgaagaatgaagatcattgatccttagaaggtttttgaaaactatacaa 139  Q
    ||||||| |||||| ||||||||| || | ||||||||||||||||| || ||||||    
T  19219156 caaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaatacaa 19219100  T

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