View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1334_low_33 (Length: 307)

Name: NF1334_low_33
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1334_low_33
NF1334_low_33
[»] chr5 (19 HSPs)
chr5 (19-188)||(30244698-30244867)
chr5 (222-299)||(30244588-30244665)
chr5 (40-188)||(30747317-30747463)
chr5 (40-127)||(30715436-30715522)
chr5 (40-126)||(30057883-30057969)
chr5 (226-297)||(29851025-29851096)
chr5 (24-90)||(30679289-30679355)
chr5 (81-188)||(30398066-30398177)
chr5 (226-295)||(30398223-30398292)
chr5 (237-297)||(30715307-30715367)
chr5 (233-288)||(30433559-30433614)
chr5 (81-180)||(29850872-29850971)
chr5 (232-288)||(30058047-30058103)
chr5 (24-60)||(29850828-29850864)
chr5 (16-60)||(29869664-29869708)
chr5 (226-288)||(30747490-30747553)
chr5 (81-188)||(29869717-29869823)
chr5 (226-297)||(29869869-29869936)
chr5 (143-188)||(30057972-30058017)
[»] chr4 (1 HSPs)
chr4 (63-188)||(20298807-20298932)
[»] chr1 (2 HSPs)
chr1 (24-103)||(596712-596791)
chr1 (227-297)||(596492-596562)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 30244867 - 30244698
Alignment:
Q  19 cattacatttagcaaagccaaggagagaactctatcaggaactgttgctgctattttacaaactatcatagatcctgtttcaataggcaaacatatttaa 118  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30244867 cattgcatttagcaaagccaaggagagaactctatcaagaactgttgctgctattttacaaactatcatagatcctgtttcaataggcaaacatatttaa 30244768  T
Q  119 aaataaacataaacnnnnnnncttaacctaaccaaatcgtaggacagaccatctgaattttaactaaatc 188  Q
    ||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30244767 aaataaacacaaacaaaaaaacttaacctaaccaaatcgtaggacagaccatctgaattttaactaaatc 30244698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 30244665 - 30244588
Alignment:
Q  222 tagaaacccattgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgcaacctttgtt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30244665 tagaaacccattgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgcaacctttgtt 30244588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 30747317 - 30747463
Alignment:
Q  40 ggagagaactctatcaggaactgttgctgctattttacaaactatcatagatcctgtttcaataggcaaacatatttaaaaataaacataaacnnnnnnn 139  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||  ||||           
T  30747317 ggagagaactctatcaggaacaattgctgctattttacaagctatcatagatcctgtttcaataggcaaacaatattaaaaataaac--aaacaaataaa 30747414  T
Q  140 cttaacctaaccaaatcgtaggacagaccatctgaattttaactaaatc 188  Q
    || ||||||| |||||| ||||| | |||||||||||||||||||||||    
T  30747415 ctcaacctaatcaaatcttaggaaaaaccatctgaattttaactaaatc 30747463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 30715522 - 30715436
Alignment:
Q  40 ggagagaactctatcaggaactgttgctgctattttacaaactatcatagatcctgtttcaataggcaaacatatttaaaaataaaca 127  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  30715522 ggagagaactctatcaggaaccattgctgctattttacaagctatcatagatcctgtttcaataggcaaac-tatttaaaaataaaca 30715436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 30057883 - 30057969
Alignment:
Q  40 ggagagaactctatcaggaactgttgctgctattttacaaactatcatagatcctgtttcaataggcaaacatatttaaaaataaac 126  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||| ||||||||||||||||||   ||||||||||||    
T  30057883 ggagagaactctatcaggaaccattgctgctattttacaagctatcatagatcatgtttcaataggcaaacaatattaaaaataaac 30057969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 29851025 - 29851096
Alignment:
Q  226 aacccattgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgcaacctttg 297  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  29851025 aacccattgaatgcccaaaaacatgagcctttttccaacctaaatgatccaacaaagtaattgcatcctttg 29851096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 30679355 - 30679289
Alignment:
Q  24 catttagcaaagccaaggagagaactctatcaggaactgttgctgctattttacaaactatcataga 90  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  30679355 catttagcaaagccaaggagagaactctatcaggaaccattgctgctattttacaagctatcataga 30679289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 30398066 - 30398177
Alignment:
Q  81 ctatcatagatcctgtttcaataggcaaacatatttaaaaataaac----ataaacnnnnnnncttaacctaaccaaatcgtaggacagaccatctgaat 176  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||    | ||||       ||||||||||||||||| ||||||| ||||||||| |    
T  30398066 ctatcatagatcctgtttcaataggcaaacataattaaaattaaacacaaacaaacaaacaaacttaacctaaccaaatcttaggacaaaccatctgagt 30398165  T
Q  177 tttaactaaatc 188  Q
    ||||||||||||    
T  30398166 tttaactaaatc 30398177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 30398223 - 30398292
Alignment:
Q  226 aacccattgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgcaacctt 295  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||| ||||    
T  30398223 aacccgttgagtgcccaaaaacatgagcctttttccaacctaaacgacccaacaaagtaattgcatcctt 30398292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 30715367 - 30715307
Alignment:
Q  237 tgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgcaacctttg 297  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||    
T  30715367 tgcccaaaaacatgagcctttttccaacctaaatgacccaacaaagtaattgcatcctttg 30715307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 30433559 - 30433614
Alignment:
Q  233 tgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattg 288  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  30433559 tgagtgcccaaaaacatgagcctttttccaacctaaatgacccaacaaagtaattg 30433614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 180
Target Start/End: Original strand, 29850872 - 29850971
Alignment:
Q  81 ctatcatagatcctgtttcaataggcaaacatatttaaaaataaacataaacnnnnnnncttaacctaaccaaatcgtaggacagaccatctgaatttta 180  Q
    |||||||||||||||||||||||||  |||||| |||||| |||||| ||||       |||||||||||||||||  || ||| |||||||||| ||||    
T  29850872 ctatcatagatcctgtttcaataggttaacataattaaaattaaacacaaacaaataaacttaacctaaccaaatctcagaacaaaccatctgaacttta 29850971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 30058047 - 30058103
Alignment:
Q  232 ttgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattg 288  Q
    ||||| ||||||||||| ||||||||||| ||||||||||| ||| |||||||||||    
T  30058047 ttgagcgcccaaaaacacgagcctttttccaacctaaatgacccaacaaagtaattg 30058103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 29850828 - 29850864
Alignment:
Q  24 catttagcaaagccaaggagagaactctatcaggaac 60  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29850828 catttagcaaagccaagtagagaactctatcaggaac 29850864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 29869664 - 29869708
Alignment:
Q  16 acccattacatttagcaaagccaaggagagaactctatcaggaac 60  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||    
T  29869664 accctttacatttagcaaagccaagtagaggactctatcaggaac 29869708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 30747490 - 30747553
Alignment:
Q  226 aacccattgagtgcccaaaaacatgagcctttttcgaacct-aaatgatccatcaaagtaattg 288  Q
    ||||| |||||| |||||||||| ||||||||||| ||||| |||||| ||| |||||||||||    
T  30747490 aacccgttgagtacccaaaaacacgagcctttttccaacctaaaatgacccaacaaagtaattg 30747553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 29869717 - 29869823
Alignment:
Q  81 ctatcatagatcctgtttcaataggcaaacatatttaaaaataaacataaacnnnnnnncttaacctaaccaaatcgtaggacagaccatctgaatttta 180  Q
    |||||||| ||||||||||||| |||||||||| ||||   |||| | ||||       ||| ||||||||||||| ||| ||| |||||||||||||||    
T  29869717 ctatcataaatcctgtttcaattggcaaacataattaact-taaatacaaacaaataaacttcacctaaccaaatcttagaacaaaccatctgaatttta 29869815  T
Q  181 actaaatc 188  Q
    | ||||||    
T  29869816 agtaaatc 29869823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 29869869 - 29869936
Alignment:
Q  226 aacccattgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgcaacctttg 297  Q
    |||||||| |||||||| ||||||||||||||||| ||||    | ||||| ||||||||||||| ||||||    
T  29869869 aacccatttagtgcccagaaacatgagcctttttccaacc----ttatccaacaaagtaattgcatcctttg 29869936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 30057972 - 30058017
Alignment:
Q  143 aacctaaccaaatcgtaggacagaccatctgaattttaactaaatc 188  Q
    ||||||| |||||| ||||| | |||||||||||||||||||||||    
T  30057972 aacctaatcaaatcttaggaaaaaccatctgaattttaactaaatc 30058017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 20298932 - 20298807
Alignment:
Q  63 ttgctgctattttacaaactatcatagatcctgtttcaataggcaaacatatttaaaaataaacataaacnnnnnnncttaacctaaccaaatcgtagga 162  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||||||| ||||||||||||| ||||       |||||||||||| |||| |||||    
T  20298932 ttgctgctattttacaaggtatcatagatcttgtttcaataggcaaacataattaaaaataaacacaaacaaataaacttaacctaacccaatcttagga 20298833  T
Q  163 cagaccatctgaattttaactaaatc 188  Q
    || |||||||||||||||||||||||    
T  20298832 caaaccatctgaattttaactaaatc 20298807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 596791 - 596712
Alignment:
Q  24 catttagcaaagccaaggagagaactctatcaggaactgttgctgctattttacaaactatcatagatcctgtttcaata 103  Q
    |||| ||||| |||| |||||||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||||||    
T  596791 cattgagcaatgccatggagagaactctatcaggaaccattgctgctaatttacaagctatcatagatcctgtttcaata 596712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 596562 - 596492
Alignment:
Q  227 acccattgagtgcccaaaaacatgagcctttttcgaacctaaatgatccatcaaagtaattgcaacctttg 297  Q
    |||||| || |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  596562 acccatggaatgcccaaaaacatgtgcctttttccaacctaaatgatccaacaaagtaattgcatcctttg 596492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University