View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_37 (Length: 277)
Name: NF1334_low_37
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 51821337 - 51821563
Alignment:
| Q |
14 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaag |
113 |
Q |
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| T |
51821337 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcaaaacttgaag |
51821436 |
T |
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| Q |
114 |
gcttagccaactctgtagaaggtaaaaagccaagtcaccacttcattaaagaatattgcttatgtttgtgaaacaagaactgctgaagagtatttgtaaa |
213 |
Q |
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| T |
51821437 |
gcttagccaactctgtagaaggtaaaaagccaggtcaccacttcattaaagaatattgcttatgtttgtgaaacaagaactgctgaagagtatttgtaaa |
51821536 |
T |
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| Q |
214 |
ttaaagatgaaaaaagttgataccaat |
240 |
Q |
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| T |
51821537 |
ttaaagatgaaaaaagttgataccaat |
51821563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 51861296 - 51861422
Alignment:
| Q |
14 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaag |
113 |
Q |
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|||||||||||||||| | |||||||||| |||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| || ||||||| |
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| T |
51861296 |
atatgcatcggcgttgctatttgtcttgtgatgaccctatttgtatttccaaactggtcaggtgaagaccttcataaatccaccatatcaaagcttgaag |
51861395 |
T |
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| Q |
114 |
gcttagccaactctgtagaaggtaaaa |
140 |
Q |
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| T |
51861396 |
gcttagccaactctatagaaggtaaaa |
51861422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 51851144 - 51851268
Alignment:
| Q |
14 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaag |
113 |
Q |
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|||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| || ||||||||||||||||| || ||||||| |
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| T |
51851144 |
atatgcataggcgttggtctttgtcttgtgatgagcctatttgtatttccaaactggtcaggggaagaactccataaatccaccatatcaaagcttgaag |
51851243 |
T |
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| Q |
114 |
gcttagccaactctgtagaaggtaa |
138 |
Q |
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| T |
51851244 |
gattagccaaatccatagaaggtaa |
51851268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 40634312 - 40634416
Alignment:
| Q |
33 |
tttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaaggcttagccaactctgtaga |
132 |
Q |
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| T |
40634312 |
tttgtcttttcatgagtcttttagtatttccaaattggtcaggggaagaccttcatcattccacagctttcaaacttgaaggccttgccaaatctataga |
40634411 |
T |
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| Q |
133 |
aggta |
137 |
Q |
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||||| |
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| T |
40634412 |
aggta |
40634416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 42454276 - 42454230
Alignment:
| Q |
87 |
ataaatccaccatatcgaaacttgaaggcttagccaactctgtagaa |
133 |
Q |
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|||||||||||||||| || |||||||||||||||| |||| ||||| |
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| T |
42454276 |
ataaatccaccatatcaaagcttgaaggcttagccatctctatagaa |
42454230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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