View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_47 (Length: 251)
Name: NF1334_low_47
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 35440047 - 35439810
Alignment:
| Q |
1 |
tgagagaaaatcatcaatcttcccaatgctttcctctaaacttgataatatgttctgagcttgaccaccatattgaaaatcaatttcttcttgatcctca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35440047 |
tgagagaaaatcatcaatcttcccaatgctttcctctaaacttgataatatgttctgagcttgaccaccatattgaaaatcaatttcttcttgatcctca |
35439948 |
T |
|
| Q |
101 |
ctactgctgctgtcactggaagtctcccattccgaatcactactcatagcatccatcaattatatgcctgtcacaatattttgatagtaacgtcataaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35439947 |
ctactgctgctgtcactggaagtctcccattccgaatcactactcatagcatccatcaattatatgcctgtcacaatattttgatagtaacgtcataaaa |
35439848 |
T |
|
| Q |
201 |
attacaataaagtatcacgccgacgcagcaatagagaa |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35439847 |
attacaataaagtatcacgccgacgcagcaatagagaa |
35439810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 6602825 - 6602683
Alignment:
| Q |
31 |
ttcctctaaacttgataatatgttctgagcttgaccaccatattgaaaatcaatttcttcttgatcctcactactgctgctgtcactggaagtctcccat |
130 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||| |||||||||| || |||||||| ||| | | ||| || |||||||||| |||||| |
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| T |
6602825 |
ttcctctaaacttgataatatgctctgagcttggccaccatagagaaaatcaatatcctcttgatcatcagtgccgctactctcactggaagactcccag |
6602726 |
T |
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| Q |
131 |
tccgaatcactactcatagcatccatcaattatatgcctgtca |
173 |
Q |
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| T |
6602725 |
tcagaatcagtcatctgagcttccatcaactatatgcctgtca |
6602683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 3700691 - 3700863
Alignment:
| Q |
1 |
tgagagaaaatcatcaatcttcccaatgctttcctctaaacttgataatatgttctgagcttgaccaccatattgaaaatcaatttcttcttgatcctca |
100 |
Q |
| |
|
|||||| ||||||| ||| | || ||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| || |||||||| ||| |
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| T |
3700691 |
tgagaggaaatcatttatcctaccgatgctttcctctaaacttgataatatgctctgagcttggccaccatagagaaaatcaatatcctcttgatcgtca |
3700790 |
T |
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| Q |
101 |
ctactgctgctgtcactggaagtctcccattccgaatcactactcatagcatccatcaattatatgcctgtca |
173 |
Q |
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|| | |||||| |||||||||| |||||| || |||||| | || ||| |||||||| ||||||||||||| |
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| T |
3700791 |
ctgccgctgctctcactggaagactcccagtctgaatcagtcatctgagcttccatcaactatatgcctgtca |
3700863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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