View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1334_low_48 (Length: 251)
Name: NF1334_low_48
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_48 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 45832187 - 45831946
Alignment:
| Q |
1 |
ttcacaatattgaatttggctactgcataaccacataacctgcaaaaagaaataatgaaagtgtttatatgagatcaatagatatgtcatagaattgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45832187 |
ttcacaatattgaatttggctactgcataaccacataacctgcaaaaagaattaatgaaagtgtttatctgagatcaatagatatgtcatagaattgtca |
45832088 |
T |
|
| Q |
101 |
aaagacacataactgtgattttgcataaattcaatcagattctttaaggcaattgcttctttcattggtttctt-atactccaaaaagactattctaatc |
199 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
45832087 |
aaagacacaaaactgtgattttgcataaattcaatcagattttttaaagcaattgcttctttaattggtttcttcatactccaaaaagactattccaatc |
45831988 |
T |
|
| Q |
200 |
catcactaacctgtatcattttaaagtcacaaaatccctatg |
241 |
Q |
| |
|
| |||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45831987 |
cctcaccaacctgtatcattttgaagtcacaaaatccctatg |
45831946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 32524547 - 32524471
Alignment:
| Q |
72 |
agatcaatagatatgtcatagaattgtcaaaagacacataactgtgattttgcataaattcaatcagattctttaag |
148 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
32524547 |
agatcaatagatatgtcataaaatggtcaaaagacacataaatgtgattttggataaattcaatcagattctttaag |
32524471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 30178289 - 30178423
Alignment:
| Q |
1 |
ttcacaatattgaatttggctactgcataaccacataacctgcaaaaagaaataatgaaagtgtttatatgagatcaatagatatgtcatagaattgtca |
100 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||| |||||||||||||| ||||||||||||| ||| | ||| |||||||||| ||||||||||||| |
|
|
| T |
30178289 |
ttcacgatattgaagttggctactgcaaaaccattcaacctgcaaaaagagataatgaaagtgtctattttggataaatagatatgacatagaattgtca |
30178388 |
T |
|
| Q |
101 |
aaagacacataactgtgattttgcataaattcaat |
135 |
Q |
| |
|
||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
30178389 |
aaaaacatataggtgtgattttgcataaattcaat |
30178423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 43604009 - 43604157
Alignment:
| Q |
1 |
ttcacaatattgaatttggctactgcataaccacataac-ctgcaaaaagaaataatgaaagtgtttatatgagatcaatagatatgtcatagaattgtc |
99 |
Q |
| |
|
||||||| |||||||||||||||| | |||||| || ||||||||| | ||||| ||||| | || | |||||||||||||||||||| ||| ||| |
|
|
| T |
43604009 |
ttcacaacattgaatttggctactaaaaaaccactgaaatctgcaaaaatagataatcaaagtatcaattttagatcaatagatatgtcataaaatggtc |
43604108 |
T |
|
| Q |
100 |
aaaagacacataactgtgattttgcataaattcaatcagattctttaag |
148 |
Q |
| |
|
|||||||||| | | ||||||||||||||| |||| |||||||||||| |
|
|
| T |
43604109 |
aaaagacacagagatttgattttgcataaatgcaattagattctttaag |
43604157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University