View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1334_low_49 (Length: 250)

Name: NF1334_low_49
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1334_low_49
NF1334_low_49
[»] chr8 (14 HSPs)
chr8 (29-250)||(22899073-22899294)
chr8 (47-248)||(24872825-24873026)
chr8 (48-248)||(25696955-25697155)
chr8 (47-248)||(25606231-25606429)
chr8 (52-244)||(25571482-25571674)
chr8 (47-248)||(25454576-25454774)
chr8 (47-248)||(25652892-25653096)
chr8 (53-248)||(25324256-25324448)
chr8 (44-244)||(25392883-25393080)
chr8 (53-248)||(25716793-25716985)
chr8 (47-241)||(25806843-25807034)
chr8 (44-229)||(25312590-25312772)
chr8 (52-244)||(25342579-25342768)
chr8 (29-248)||(23259768-23259987)
[»] scaffold0070 (3 HSPs)
scaffold0070 (57-248)||(15309-15500)
scaffold0070 (47-248)||(35352-35550)
scaffold0070 (198-248)||(48813-48863)
[»] scaffold0830 (1 HSPs)
scaffold0830 (53-237)||(2809-2993)
[»] scaffold1415 (1 HSPs)
scaffold1415 (53-244)||(636-824)
[»] chr4 (1 HSPs)
chr4 (44-244)||(10325435-10325635)
[»] chr2 (1 HSPs)
chr2 (56-123)||(5100563-5100630)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 22899294 - 22899073
Alignment:
Q  29 attattcccattcacagaaaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacatt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22899294 attattcccattcacagaaaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacatt 22899195  T
Q  129 aaagttatgtttccgattgacttaggaagattggatagtaaatgatttcctgataagtcaagaatatttaaatatctacaatttgtcaaggaagtaaaga 228  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  22899194 aaagttatgtttccgattgacttaggaagattggatagtatatgatttcctgataagtctagaatatttaaatatctacaattcgtcaaggaagtaaaga 22899095  T
Q  229 actgaagagaatcttctattat 250  Q
    ||||||||||||||||||||||    
T  22899094 actgaagagaatcttctattat 22899073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 47 - 248
Target Start/End: Complemental strand, 24873026 - 24872825
Alignment:
Q  47 aaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgatt 146  Q
    |||| ||||||||||  ||||||||||||| ||||| ||||||| |||| ||||||||||||| | ||||   | |||   | ||||||||||||| |||    
T  24873026 aaaatatagcaagttggtcatgtttccaacttctaggggaatataaccaccaattccacatgattttgccctgatgtattctgaagttatgtttccaatt 24872927  T
Q  147 gacttaggaagattggatagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttct 245  Q
    ||||| |||||||||| ||||| |||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  24872926 gactttggaagattgggtagtacatgattccctgataagtcaaga-tatttcaaatatctacaattcgtcaaggaagtaaagaattgatgagaatcttct 24872828  T
Q  246 att 248  Q
    |||    
T  24872827 att 24872825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 248
Target Start/End: Original strand, 25696955 - 25697155
Alignment:
Q  48 aaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgattg 147  Q
    |||| ||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||| ||||||  ||||||   | |||||| |||||| ||||    
T  25696955 aaagttagcaagttgctcatgtttccaacttcttggggaatattaccatcaattccacatgattctgccgtaaagtattctgaagttaggtttccaattg 25697054  T
Q  148 acttaggaagattggatagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttcta 246  Q
    ||||||||||||||||||    |||||| | |||||  || | ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  25697055 acttaggaagattggatatatgatgattccttgatagctcta-aatatttcaaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttcta 25697153  T
Q  247 tt 248  Q
    ||    
T  25697154 tt 25697155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 47 - 248
Target Start/End: Original strand, 25606231 - 25606429
Alignment:
Q  47 aaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgatt 146  Q
    |||| |||||||||| |||||||||||||| ||||| ||||||| |||| ||||||||||||| ||||||   | |||   | ||||||||||||| |||    
T  25606231 aaaaaatagcaagttgctcatgtttccaacttctaggggaatataaccaccaattccacatgattctgccctgatgtattctgaagttatgtttccaatt 25606330  T
Q  147 gacttaggaagattggatagtaaatgatttcctgataagtcaagaatatttaaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttcta 246  Q
    ||||||||||||||||   ||| |||||| ||||||||||| |||   || |||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  25606331 gacttaggaagattgg---gtatatgattacctgataagtctagatacttcaaatatctacaatttgtcaaggaagtaaagaattgatgagaatcatcta 25606427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 25571482 - 25571674
Alignment:
Q  52 atagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgattgactt 151  Q
    |||||||||| |||||||||||||| ||||  ||||||||||| |||||||||||||| | ||||   ||| |   | ||||||||||||| ||||||||    
T  25571482 atagcaagttgctcatgtttccaacttctacgggaatattaccctcaattccacatgactgtgcccggaagaattctgaagttatgtttccaattgactt 25571581  T
Q  152 aggaagattggatagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttc 244  Q
    ||||||||||| ||||| |||||| ||||||||||| || |||||| ||||  |||||||||||||||||||||||||| ||| ||||||||||    
T  25571582 aggaagattgggtagtacatgattccctgataagtctag-atatttcaaatgcctacaatttgtcaaggaagtaaagaattgatgagaatcttc 25571674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 47 - 248
Target Start/End: Original strand, 25454576 - 25454774
Alignment:
Q  47 aaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgatt 146  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||| |||| ||||||||||||| ||||||   ||| |   | |||||| |||||| |||    
T  25454576 aaaagatagcaagttgctcatgtttccaacttctaggggaatataaccaccaattccacatgattctgccctgaagaattctgaagttaggtttccaatt 25454675  T
Q  147 gacttaggaagattggatagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttct 245  Q
    |||||||||||||||||||    |||||| |||||||  || | ||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  25454676 gacttaggaagattggatat---atgattccctgatagctcta-aatatttcaaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttct 25454771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 248
Target Start/End: Original strand, 25652892 - 25653096
Alignment:
Q  47 aaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgatt 146  Q
    |||| ||| |||||| |||||||||||||| ||| | |||||||||||||||||||||||||| ||||||   | |||   | ||||||| ||||| |||    
T  25652892 aaaatataacaagttgctcatgtttccaacttcttggggaatattaccatcaattccacatgattctgccctgatgtattctgaagttatatttccaatt 25652991  T
Q  147 gacttaggaagattgga---tagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaagaactgaagagaatct 242  Q
    ||||||||||||||||    ||||| |||||| ||||||||||||||| ||| | |||||||||||||||||||| ||||||||||| ||| ||||||||    
T  25652992 gacttaggaagattggtgggtagtatatgattacctgataagtcaaga-tatgtcaaatatctacaatttgtcaatgaagtaaagaattgatgagaatct 25653090  T
Q  243 tctatt 248  Q
    ||||||    
T  25653091 tctatt 25653096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 248
Target Start/End: Original strand, 25324256 - 25324448
Alignment:
Q  53 tagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgattgactta 152  Q
    ||||||||| |||||||||||||| ||||| ||||||| |||| ||||||||||||| | ||||   | |||   | ||||||||||||| |||||||||    
T  25324256 tagcaagttgctcatgtttccaacttctaggggaatataaccaccaattccacatgattttgccctgatgtattctgaagttatgtttccaattgactta 25324355  T
Q  153 ggaagattggatagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctatt 248  Q
    ||||||||||   ||| |||||| || |||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  25324356 ggaagattgg---gtatatgattcccggataagtctaga-tatttcaaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttctatt 25324448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 244
Target Start/End: Original strand, 25392883 - 25393080
Alignment:
Q  44 agaaaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccg 143  Q
    |||||||| ||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||| |||||  | ||| |     |||||||||||||     
T  25392883 agaaaaagttagcaagttgctcatgtttccaacttcttggggaatattaccatcaattccacatgattctgcggagaagaattccgaagttatgtttcca 25392982  T
Q  144 attgacttaggaagattggatagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaagaactgaagagaatct 242  Q
    ||||||||||||||||| ||   || |||||| |||||||  || | ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  25392983 attgacttaggaagattaga---tatatgattccctgatagctcta-aatatttcaaatatctacaatttgtcaaggaagtaaagaattgatgagaatct 25393078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 248
Target Start/End: Original strand, 25716793 - 25716985
Alignment:
Q  53 tagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgattgactta 152  Q
    |||||||||  ||||||||||||| ||| | ||||||||||||||||||||||||||  ||||    ||| |   | | ||||||||||| |||||||||    
T  25716793 tagcaagttggtcatgtttccaacttcttggggaatattaccatcaattccacatgatgctgctcggaagaattctgatgttatgtttccaattgactta 25716892  T
Q  153 ggaagattggatagtaaatgatttcctgataagtcaagaatatttaaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctatt 248  Q
    |||||||||||||    |||||| ||||||||||| |||   || |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  25716893 ggaagattggatat---atgattccctgataagtctagatacttcaaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttctatt 25716985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 241
Target Start/End: Original strand, 25806843 - 25807034
Alignment:
Q  47 aaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgatt 146  Q
    |||| ||||||| || |||||||||||||| ||||| ||||||| |||| ||||||||||||| ||||||   | |||   | || |||||||||| |||    
T  25806843 aaaaaatagcaatttgctcatgtttccaacttctaggggaatataaccaccaattccacatgattctgccctgatgtattctgaacttatgtttccaatt 25806942  T
Q  147 gacttaggaagattggatagtaaatgatttcctgataagtcaagaatatttaaatatctacaatttgtcaaggaagtaaagaactgaagagaatc 241  Q
    ||||||||||||||||   ||| |||||| ||||||||||| |||   || |||||||||||||||||||||||||||||||| ||| |||||||    
T  25806943 gacttaggaagattgg---gtatatgattccctgataagtctagatacttcaaatatctacaatttgtcaaggaagtaaagaattgatgagaatc 25807034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 25312590 - 25312772
Alignment:
Q  44 agaaaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccg 143  Q
    |||||||| |||||||||  ||||||||||||| ||| | ||||||| |||| ||||||||||||| ||||||   | |||   | || ||||||||||     
T  25312590 agaaaaagttagcaagttggtcatgtttccaacttcttggggaatataaccaccaattccacatgattctgccctgatgtattctgaacttatgtttcca 25312689  T
Q  144 attgacttaggaagattggatagtaaatgatttcctgataagtcaagaatatttaaatatctacaatttgtcaaggaagtaaagaa 229  Q
    |||||||||||||||||||   ||| |||||| ||||||||||| |||   || ||||||||||||||||||||||||||||||||    
T  25312690 attgacttaggaagattgg---gtatatgattacctgataagtctagatacttcaaatatctacaatttgtcaaggaagtaaagaa 25312772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 25342579 - 25342768
Alignment:
Q  52 atagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgattgactt 151  Q
    ||||||| || |||||||||||||| ||||  ||||||||||| |||||||||||||| | |||| | ||| |   | ||||||||||||| ||||||||    
T  25342579 atagcaaattgctcatgtttccaacttctacgggaatattaccctcaattccacatgattttgcccagaagaattctgaagttatgtttccaattgactt 25342678  T
Q  152 aggaagattggatagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttc 244  Q
     ||||||||||   ||| |||||| |||||||  || | ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  25342679 tggaagattgg---gtatatgattacctgatagctcta-aatatttcaaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttc 25342768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 23259768 - 23259987
Alignment:
Q  29 attattcccattcacagaaaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacatt 128  Q
    ||||||||||   ||||||||| ||||||| |||||||||||||| || ||||| ||||| |||||| ||||||||||  ||||||| | ||| |         
T  23259768 attattcccaaaaacagaaaaatatagcaatttactcatgtttccgacttctaggggaattttaccaacaattccacacaaatctgcaataaactttgac 23259867  T
Q  129 aaagttatgtttccgattgacttaggaagattggatagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaag 227  Q
     ||||||||||||| |||||||| |||||||||||| ||| |||||||| ||  |  || || |||||| |||| ||| ||||||  ||| |||||||||    
T  23259868 gaagttatgtttccaattgactttggaagattggatggtatatgatttcttgcaagttctag-atatttcaaatgtctgcaatttcccaaagaagtaaag 23259966  T
Q  228 aactgaagagaatcttctatt 248  Q
    || ||||||||||| ||||||    
T  23259967 aattgaagagaatcatctatt 23259987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 57 - 248
Target Start/End: Complemental strand, 15500 - 15309
Alignment:
Q  57 aagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgattgacttaggaa 156  Q
    |||||||||||||||||||| ||||| ||||||| |||| ||||||||||||| ||| ||   | |||   | ||||||||||||| |||||||| ||||    
T  15500 aagttactcatgtttccaacttctaggggaatataaccaccaattccacatgattctaccctgatgtattctgaagttatgtttccaattgactttggaa 15401  T
Q  157 gattggatagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctatt 248  Q
     ||||||||||| |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  15400 tattggatagtacatgattccctgataagtcaaga-tatttcaaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttctatt 15309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 248
Target Start/End: Complemental strand, 35550 - 35352
Alignment:
Q  47 aaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgatt 146  Q
    ||||||||||||| | |||||||||||||| ||||| ||||||| |||| ||||||||||||| | ||||   |||||   | ||||||||||||| |||    
T  35550 aaaagatagcaaggtgctcatgtttccaacttctaggggaatataaccaccaattccacatgattttgccctgaagtattctgaagttatgtttccaatt 35451  T
Q  147 gacttaggaagattggatagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttct 245  Q
    |||||||||||||||||||    |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  35450 gacttaggaagattggatat---atgattacctgataagtcaaga-tatttcaaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttct 35355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 48863 - 48813
Alignment:
Q  198 aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttctatt 248  Q
    |||||||||||| ||||||||||| ||||||||||| | ||||| ||||||    
T  48863 aaatatctacaacttgtcaaggaattaaagaactgatgtgaatcatctatt 48813  T

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Target: scaffold0830 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 2993 - 2809
Alignment:
Q  53 tagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatc--tgccaaaaagtacattaaagttatgtttccgattgact 150  Q
    ||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||| ||||  || |||||  ||  || ||||||||||||| |||||||    
T  2993 tagcaagttgctcatgtttccaacttctaggggaatactaccatcaattccacataaatccatgtcaaaa--taagttgaagttatgtttccaattgact 2896  T
Q  151 taggaagattggatagtaaatgatttcctgataagtcaagaatatttaaatatctacaatttgtcaaggaagtaaagaactgaagag 237  Q
    |||||||||| |||  || | ||||||  |||| ||| ||||| || |||||||||||||||||||||||||||||||| |||||||    
T  2895 taggaagatttgatgatataggatttctcgatatgtctagaattttcaaatatctacaatttgtcaaggaagtaaagaattgaagag 2809  T

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Target: scaffold1415 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold1415
Description:

Target: scaffold1415; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 636 - 824
Alignment:
Q  53 tagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccgattgactta 152  Q
    |||||||||  ||||||||||||| ||| | |||||||||||||||||||||||||| |||||  ||||| |   | |||||| |||||| |||||||||    
T  636 tagcaagttggtcatgtttccaacttcttggggaatattaccatcaattccacatgattctgcagaaaagaattctgaagttaggtttccaattgactta 735  T
Q  153 ggaagattggatagtaaatgatttcctgataagtcaagaatattt-aaatatctacaatttgtcaaggaagtaaagaactgaagagaatcttc 244  Q
    |||||||||||||    |||||| |||||||  || | ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  736 ggaagattggatat---atgattccctgatagctcta-aatatttcaaatatctacaatttgtcaaggaagtaaagaattgatgagaatcttc 824  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 244
Target Start/End: Original strand, 10325435 - 10325635
Alignment:
Q  44 agaaaaagatagcaagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagtacattaaagttatgtttccg 143  Q
    |||||||  ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||  ||||| | ||| |   |   |||| ||||||     
T  10325435 agaaaaacgtagcaagttgctcatgtttccaacttctaggggaatattaccatcaattccacatgatgctgcccagaagaattctgctgttaggtttcca 10325534  T
Q  144 attgacttaggaagattggatagtaaatgatttcctgataagtcaagaatatttaaatatctacaatttgtcaaggaagtaaagaactgaagagaatctt 243  Q
    ||||| ||||||||||| | ||||| |||||| | ||||||||| ||||  || |||| ||||||||||| ||||||||||||||| ||| |||||||||    
T  10325535 attgatttaggaagatttggtagtatatgattccttgataagtctagaaatttcaaatttctacaatttgacaaggaagtaaagaattgatgagaatctt 10325634  T
Q  244 c 244  Q
    |    
T  10325635 c 10325635  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 5100630 - 5100563
Alignment:
Q  56 caagttactcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagt 123  Q
    |||||| || |||||||| |  |||| ||||||||| |||| ||||||||| ||||||||||||||||    
T  5100630 caagttgcttatgtttccgatttctacaggaatatttccattaattccacaagaatctgccaaaaagt 5100563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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