View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_5 (Length: 586)
Name: NF1334_low_5
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 204 - 435
Target Start/End: Complemental strand, 1255569 - 1255339
Alignment:
| Q |
204 |
gaagtctgtaggtcaccccaaacatacaaacaattaaaacaatataaatagatcatagaatgaacactaatcaaagattatcaaaccgatgattggaccg |
303 |
Q |
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| T |
1255569 |
gaagtctgtaggtcaccccaaacatacaaacaattaaaacaatacaagtagatcatagaatgaacactaatcaaatattatcaaactgatgattggaccg |
1255470 |
T |
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| Q |
304 |
accgtcaacacggaacaagcaaaacaactctttcaaaccaaacaatccaatgccaagcaagtagaagaatgatgaggatatcgaaccactttcaataaat |
403 |
Q |
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| T |
1255469 |
accgtcaacacggaacaagcaaaacaactcttttaaaccaaacaatccaatgccaagcaaatagaagaatgatgaggatatcgaaccactttcaataaat |
1255370 |
T |
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| Q |
404 |
gcacatgaaaaagaccattttaaggtgttatt |
435 |
Q |
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| T |
1255369 |
gcacatg-aaaagaccattttaaggtgttatt |
1255339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 1255763 - 1255636
Alignment:
| Q |
10 |
aacaatatattaaaaacctatttagattcaacaagtggtgttgtattggattttggagtgtgtccatctcaatgttttagattcctttatctttaatgtt |
109 |
Q |
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| T |
1255763 |
aacaatatattaaaaacctatttagattcaacaagtagtgttgtgttggattttggagtgtgttcatctcaatgttttagattcgtttatctttaatgtt |
1255664 |
T |
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| Q |
110 |
aatttcaatgagttagtcagacttcttc |
137 |
Q |
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| T |
1255663 |
aatttcaatgagttagtcagacttcttc |
1255636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 509 - 557
Target Start/End: Complemental strand, 1255264 - 1255216
Alignment:
| Q |
509 |
catttaataatttcaatacatagttaatgtaaaaatactccgatctttt |
557 |
Q |
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| T |
1255264 |
catttaataatttcaatagatagttcatgtaaaaatactccgatctttt |
1255216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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