View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_50 (Length: 250)
Name: NF1334_low_50
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 34429793 - 34429578
Alignment:
| Q |
16 |
atcaaaaccatgaatcaatttcaacaacttcaccaaattctcatcagaagcatcatctcttgctgctaacacagcctcctccaacactttgcattcattt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34429793 |
atcaaaaccatgaatcaatttcaacaacttcaccaaattctcatcagaagcatcatctcttgctgctaacacagcctcctccaacacttcgcattcattt |
34429694 |
T |
|
| Q |
116 |
tcccaaccattcttcttttcctgttgctttgcattctcaacacccataccatcctcctcatcatcatcatcgtcgccttctttgtattccgattttatac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34429693 |
tcccaaccattcttcttttcctgttgctttgcattctcaacacccataccatccccctcatcatcatcatcgt---cttctttgtattccgattttatac |
34429597 |
T |
|
| Q |
216 |
gtttacttctactacttct |
234 |
Q |
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||||||||||||||||||| |
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| T |
34429596 |
gtttacttctactacttct |
34429578 |
T |
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