View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_low_52 (Length: 243)
Name: NF1334_low_52
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_low_52 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 422896 - 422733
Alignment:
| Q |
18 |
acctccatcaacaaaactatttctttatcgccaaatcaaatcgacgaaataccaaattagtatattatgttggacaagaacaacaacacagtcgcagtca |
117 |
Q |
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| T |
422896 |
acctccatcaacaaaactatttctttatcgccaaatcaaatcgacgaaataccaaattagtatattatgttggacaagaacaacaacacagtcgcagtca |
422797 |
T |
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| Q |
118 |
caggggaggaatccattcatgatgatcaagaaaccatagctactcctgatggtgcaacagctag |
181 |
Q |
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| T |
422796 |
caggggaggaatccattcataatgatcaagaaaccatagctactcctgatgatgaaacacctag |
422733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 411289 - 411216
Alignment:
| Q |
18 |
acctccatcaacaaaactatttctttatcgccaaatcaaatcgacgaaataccaaattagtatattatgttgga |
91 |
Q |
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| T |
411289 |
acctacatcaacaaaactatttccttatcgccaaatcaaatcgacgaaataccaagttagtaaattatgttgga |
411216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 30209000 - 30208922
Alignment:
| Q |
90 |
gacaagaacaacaacacagtcgcagtcacaggggaggaatccattcatgatgatcaagaaaccatagctactcctgatg |
168 |
Q |
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| T |
30209000 |
gacaacaacaacaacacagttgctttcacaggggaggaatccattcctgataatcaagaaaccatagctgctcctgatg |
30208922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 45924490 - 45924525
Alignment:
| Q |
200 |
gatgatgttttccctggtcttgttatcagaattatc |
235 |
Q |
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| T |
45924490 |
gatgatgttttccctggtcttgttatcagaattatc |
45924525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 45936438 - 45936473
Alignment:
| Q |
200 |
gatgatgttttccctggtcttgttatcagaattatc |
235 |
Q |
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| T |
45936438 |
gatgatgttttccctggtcttgttatcagaattatc |
45936473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 17529914 - 17529844
Alignment:
| Q |
18 |
acctccatcaacaaaactatttctttatcgccaaatcaaatcgacgaaataccaaattagtatattatgtt |
88 |
Q |
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| T |
17529914 |
acctccatcatcaaaaatatttctttatcaccaaatccaattgatgaaataccaagttagtatatcatgtt |
17529844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 17530659 - 17530725
Alignment:
| Q |
25 |
tcaacaaaactatttctttatcgccaaatcaaatcgacgaaataccaaattagtatattatgttgga |
91 |
Q |
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||||||||| |||||||||||| | |||||| ||||| ||||| |||| |||||||||||||||||| |
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| T |
17530659 |
tcaacaaaagtatttctttatcacaaaatcatatcgatgaaatgccaagttagtatattatgttgga |
17530725 |
T |
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