View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1334_low_6 (Length: 563)

Name: NF1334_low_6
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1334_low_6
NF1334_low_6
[»] chr1 (8 HSPs)
chr1 (8-473)||(37869716-37870181)
chr1 (25-470)||(37861557-37861995)
chr1 (25-300)||(37914337-37914604)
chr1 (345-470)||(37883723-37883848)
chr1 (104-229)||(37883493-37883621)
chr1 (329-462)||(37914611-37914737)
chr1 (25-62)||(37883399-37883436)
chr1 (247-300)||(37883657-37883710)
[»] scaffold0187 (9 HSPs)
scaffold0187 (345-470)||(4028-4153)
scaffold0187 (345-462)||(13632-13749)
scaffold0187 (345-462)||(23960-24077)
scaffold0187 (93-223)||(13392-13526)
scaffold0187 (93-223)||(23720-23854)
scaffold0187 (25-229)||(4255-4475)
scaffold0187 (247-300)||(13566-13619)
scaffold0187 (247-300)||(23894-23947)
scaffold0187 (247-300)||(4166-4219)


Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 473
Target Start/End: Original strand, 37869716 - 37870181
Alignment:
Q  8 ccaataatattactactactaacgtgaatcttgagaagagaggaaaagtacaaaaggagaaccaataataatcagtgattttggttgaattctctcatgt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37869716 ccaataatattactactactaacgtgaatcttgagaagagaggaaaagtacaaaagcagaaccaataataatcagtgattttggttgaattctctcatgt 37869815  T
Q  108 acgaaactagcggaccacagaaaatgtgcttcacaaagttgttacaaccctgcctagtcagcttgatttgaaccatttacattggtctttaccactgctt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37869816 acgaaactagcggaccacagaaaatgtgcttcacaaagttgttacaaccctgccaagtcagcttgatttgaaccatttacattggtctttaccactgctt 37869915  T
Q  208 tacagattcttaatttaacactgttaatcacttatgtagtataaataagagatattaccttgtcatttaaaaaccaagacaaccacttctagcnnnnnnn 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           
T  37869916 tacagattcttaatttaacactgttaatcacttatgtagtataaataagagatattacattgtcatttaaaaaccaagacaaccacttctagcaaaaaaa 37870015  T
Q  308 gaagctgaaattagtgttgtccttatccagcagctagcattaatcatcatgggaggtggtaatgggcagaacaagtcttcttcaggttttttctcaattt 407  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37870016 gaagcagaaattagtgttgtccttatccagcagctagcattaatcatcatgggaggtggtaatgggcagaacaagtcttcttcaggttttttctcaattt 37870115  T
Q  408 tcagttgcttcacatctaagaataagtctagagcagggtactatgacgattgcgggcacaagattt 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37870116 tcagttgcttcacatctaagaataagtctagagcagggtactatgacgattgcgggcacaagattt 37870181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 25 - 470
Target Start/End: Original strand, 37861557 - 37861995
Alignment:
Q  25 actaacgtgaatcttgagaagagaggaaaagtacaaaaggagaaccaataataatc-agtgattttggttgaattctctcatgtacgaaactagcggacc 123  Q
    |||||||| ||||||||||||||| | ||||| |||||| ||||||||| ||||||   |  ||||||| ||||||||||||||||||||||||||||||    
T  37861557 actaacgtaaatcttgagaagagaag-aaagttcaaaagcagaaccaatgataatcgtttttttttggtagaattctctcatgtacgaaactagcggacc 37861655  T
Q  124 acagaaaatgtgcttcacaaagttgttacaaccctgcctagtcagcttgatttgaaccatttacattggtctttaccactgcttta-cagattcttaatt 222  Q
    ||||||||||||||| |||||||||||||||||||||| | ||||| ||||||||||||||||  || |||||||||||| |||||  ||||||||||||    
T  37861656 acagaaaatgtgcttgacaaagttgttacaaccctgccaactcagcatgatttgaaccatttaggttagtctttaccactcctttattagattcttaatt 37861755  T
Q  223 taacactgttaatcacttatgtagtataaataagagatattaccttgtcatttaaaaaccaagacaaccacttctagc-nnnnnnngaagctgaaattag 321  Q
    | ||| | | ||||||||||    ||||||||||||||||||| ||||||||| ||||||||||||| || |||||||        | ||| ||||||||    
T  37861756 ttacattctgaatcacttat---atataaataagagatattacattgtcatttgaaaaccaagacaatcatttctagcaaaaaaaagtagcagaaattag 37861852  T
Q  322 tgttgtccttatccagcagctagcattaatcatcatgggaggtggtaatgggcagaacaagtcttcttcaggttttttctcaattttcagttgcttcaca 421  Q
    |||||||||||||||| ||||   ||||||||||||||  |||||||   |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  37861853 tgttgtccttatccagaagct---attaatcatcatggttggtggta---ggcaaaacaagtcttcttcaggtttcttctcaattttcagttgcttcaca 37861946  T
Q  422 tctaagaataagtctagagcagggtactatgacgattgcgggcacaaga 470  Q
    ||||||||||||| |||||| ||||||||||| |||||||||| |||||    
T  37861947 tctaagaataagtatagagcggggtactatgatgattgcgggcgcaaga 37861995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 25 - 300
Target Start/End: Original strand, 37914337 - 37914604
Alignment:
Q  25 actaacgtgaatcttgagaagagaggaaaagtacaaaaggagaaccaataataatcagtgattttggttgaattctctcatgtacgaaactagcggacca 124  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37914337 actaacttgaatcttgagaagagaggaaaagtacaaaagcagaaccaataataatcagtgattttggttgaattctctcatgtacgaaactagcggacca 37914436  T
Q  125 cagaaaatgtgc-ttcacaaagttgttacaaccctgcctagtcagcttgatttgaaccatttacattggtctttaccactgcttta-cagattcttaatt 222  Q
    |||||||||| | || |||||          || |||| | ||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||    
T  37914437 cagaaaatgtaccttgacaaa----------ccttgccaactcagcatgatttgaaccatttacgttagtctttaccactgctttatcagattcttaatt 37914526  T
Q  223 taacactgttaatcacttatgtagtataaataagagatattaccttgtcatttaaaaaccaagacaaccacttctagc 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37914527 tcacactgttaatcacttatgtagtataaataagagatattaccttgtcatttaaaaaccaagacaatcacttctagc 37914604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 345 - 470
Target Start/End: Original strand, 37883723 - 37883848
Alignment:
Q  345 cattaatcatcatgggaggtggtaatgggcagaacaagtcttcttcaggttttttctcaattttcagttgcttcacatctaagaataagtctagagcagg 444  Q
    ||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  37883723 cattaatcaccatgggagatggtaataggcagaacaagtcttcttcaggtttcttctcaattttcaattgcttcacatctaagaataagtctagggcagg 37883822  T
Q  445 gtactatgacgattgcgggcacaaga 470  Q
     |||||||| ||||| |||| |||||    
T  37883823 atactatgatgattgtgggcgcaaga 37883848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 37883493 - 37883621
Alignment:
Q  104 atgtacgaaactagcggaccacagaaaatgtgc-ttcacaaagttgttacaaccctgccta-gtcagcttgatttgaaccatttacattggtctttacca 201  Q
    |||||||||||||||||||||||||||| |||| || | ||||||||||||||| |||| | |||||| ||||||||||||||||  || ||||||||||    
T  37883493 atgtacgaaactagcggaccacagaaaaagtgccttaagaaagttgttacaaccttgccaaagtcagcatgatttgaaccatttatgttagtctttacca 37883592  T
Q  202 ctgcttta-cagattcttaatttaacact 229  Q
    |||||||| |||||||||||||| |||||    
T  37883593 ctgctttatcagattcttaatttcacact 37883621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 462
Target Start/End: Original strand, 37914611 - 37914737
Alignment:
Q  329 cttatccagcagctagcattaatcatcatgggaggtggtaatgggcagaacaagtcttcttcaggttttttctcaattttcagttgcttcacatctaaga 428  Q
    |||||| ||||| ||||||||||||||||||||||||||||  |||     ||||||||||||||||| ||||||||||| |    ||||| ||| ||||    
T  37914611 cttatctagcag-tagcattaatcatcatgggaggtggtaa--ggct----aagtcttcttcaggtttcttctcaatttttaaaatcttcaaatcaaaga 37914703  T
Q  429 ataagtctagagcagggtactatgacgattgcgg 462  Q
    |||||||||||||||| |||||||| ||||||||    
T  37914704 ataagtctagagcaggatactatgatgattgcgg 37914737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 37883399 - 37883436
Alignment:
Q  25 actaacgtgaatcttgagaagagaggaaaagtacaaaa 62  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  37883399 actaacgtgaatcttgagaggagaagaaaagtacaaaa 37883436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 37883657 - 37883710
Alignment:
Q  247 tataaataagagatattaccttgtcatttaaaaaccaagacaaccacttctagc 300  Q
    ||||||||||||||||| ||||||||||| |||| ||| |||| | ||||||||    
T  37883657 tataaataagagatatttccttgtcatttgaaaaacaatacaatcgcttctagc 37883710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 86; Significance: 8e-41; HSPs: 9)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 345 - 470
Target Start/End: Complemental strand, 4153 - 4028
Alignment:
Q  345 cattaatcatcatgggaggtggtaatgggcagaacaagtcttcttcaggttttttctcaattttcagttgcttcacatctaagaataagtctagagcagg 444  Q
    ||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  4153 cattaatcaccatgggagatggtaataggcagaacaagtcttcttcaggtttcttctcaattttcaattgcttcacatctaagaataagtctagggcagg 4054  T
Q  445 gtactatgacgattgcgggcacaaga 470  Q
     |||||||| ||||| |||| |||||    
T  4053 atactatgatgattgtgggcgcaaga 4028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 345 - 462
Target Start/End: Original strand, 13632 - 13749
Alignment:
Q  345 cattaatcatcatgggaggtggtaatgggcagaacaagtcttcttcaggttttttctcaattttcagttgcttcacatctaagaataagtctagagcagg 444  Q
    |||||||||||||||||||||||||| ||| ||||||||||||  || |||| ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  13632 cattaatcatcatgggaggtggtaataggcggaacaagtcttccacaagtttcttctcaattttcaattgcttcacatctaaaaataagtatagatcagg 13731  T
Q  445 gtactatgacgattgcgg 462  Q
    ||||||||| ||||||||    
T  13732 gtactatgatgattgcgg 13749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 345 - 462
Target Start/End: Original strand, 23960 - 24077
Alignment:
Q  345 cattaatcatcatgggaggtggtaatgggcagaacaagtcttcttcaggttttttctcaattttcagttgcttcacatctaagaataagtctagagcagg 444  Q
    |||||||||||||||||||||||||| ||| ||||||||||||  || |||| ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  23960 cattaatcatcatgggaggtggtaataggcggaacaagtcttccacaagtttcttctcaattttcaattgcttcacatctaaaaataagtatagatcagg 24059  T
Q  445 gtactatgacgattgcgg 462  Q
    ||||||||| ||||||||    
T  24060 gtactatgatgattgcgg 24077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 13392 - 13526
Alignment:
Q  93 tgaattctctcatgtacgaaactagcggaccacagaaaatgtgc-ttcacaaagttgttacaaccctgcctagtcagcttgatttgaaccatttacattg 191  Q
    |||||||||||||||| |||||||| |  ||| |||||| |||| || |||||||||||||||||||||| | ||||| |||||||||||||||||||||    
T  13392 tgaattctctcatgtatgaaactagtgatccatagaaaaagtgccttgacaaagttgttacaaccctgccaactcagcatgatttgaaccatttacattg 13491  T
Q  192 gtct--ttaccactgcttta-cagattcttaattt 223  Q
    ||||  |||||||| |||||  |||||||||||||    
T  13492 gtctaattaccactcctttattagattcttaattt 13526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 23720 - 23854
Alignment:
Q  93 tgaattctctcatgtacgaaactagcggaccacagaaaatgtgc-ttcacaaagttgttacaaccctgcctagtcagcttgatttgaaccatttacattg 191  Q
    |||||||||||||||| |||||||| |  ||| |||||| |||| || |||||||||||||||||||||| | ||||| |||||||||||||||||||||    
T  23720 tgaattctctcatgtatgaaactagtgatccatagaaaaagtgccttgacaaagttgttacaaccctgccaactcagcatgatttgaaccatttacattg 23819  T
Q  192 gtct--ttaccactgcttta-cagattcttaattt 223  Q
    ||||  |||||||| |||||  |||||||||||||    
T  23820 gtctaattaccactcctttattagattcttaattt 23854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 4475 - 4255
Alignment:
Q  25 actaacgtgaatcttgagaagagaggaaaagtacaaaaggagaaccaataataa----tcagtgattttggttgaattctctcatgtacgaaacta---- 116  Q
    |||||| ||||||||||||||||| |||||||||||||  | |||||| |||||    |||||| ||||||| ||||| ||| |||||||||||||        
T  4475 actaacatgaatcttgagaagagaagaaaagtacaaaatcaaaaccaagaataatcagtcagtgtttttggtagaattgtcttatgtacgaaactatcgg 4376  T
Q  117 --gcggaccacagaaaatg-tgcttcacaaagttgttacaaccctgcctagtcagc----ttgatttgaaccatttacattggtctttaccactgcttta 209  Q
       |||||||||||||||| | ||| | |||||||||  ||||||||| | |||||    || ||||||||||||||  || ||||||||||||||||||    
T  4375 actcggaccacagaaaatgttccttgagaaagttgttgaaaccctgccaactcagcatgattaatttgaaccatttatgttagtctttaccactgcttta 4276  T
Q  210 -cagattcttaatttaacact 229  Q
     |||||||||||||| |||||    
T  4275 tcagattcttaatttcacact 4255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 13566 - 13619
Alignment:
Q  247 tataaataagagatattaccttgtcatttaaaaaccaagacaaccacttctagc 300  Q
    ||||||||||||||||| ||||||||||| |||| |||||||| ||||||||||    
T  13566 tataaataagagatatttccttgtcatttgaaaaacaagacaatcacttctagc 13619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 23894 - 23947
Alignment:
Q  247 tataaataagagatattaccttgtcatttaaaaaccaagacaaccacttctagc 300  Q
    ||||||||||||||||| ||||||||||| |||| |||||||| ||||||||||    
T  23894 tataaataagagatatttccttgtcatttgaaaaacaagacaatcacttctagc 23947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 4219 - 4166
Alignment:
Q  247 tataaataagagatattaccttgtcatttaaaaaccaagacaaccacttctagc 300  Q
    ||||||||||||||||| ||||||||||| |||| ||| |||| | ||||||||    
T  4219 tataaataagagatatttccttgtcatttgaaaaacaatacaatcgcttctagc 4166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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