View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13350_high_2 (Length: 438)
Name: NF13350_high_2
Description: NF13350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13350_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 916865 - 916432
Alignment:
| Q |
1 |
gtttgttataatcagaaactaaaaatagtctatttggttaatccttataaaaaagacagagtagtagtagtatttgacaacaatttgggcattacatggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
916865 |
gtttgttataatcagaaactaaaaatagtctatttg-ttaatccttataaaaaagacagagtagtagtagtatttgacaacaatttgggcattccatggt |
916767 |
T |
|
| Q |
101 |
aaggagggccaaaaagaaggcccctccaacatgcctcgtcttattatccatagcccccacgtaccttagaacatggaagaaattattacactcttcccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
916766 |
aaggagggccaaaaagaaggcccctccaacatgcctcgtcttattatccatagcccccacgtaccttagaacatggaagaaattattacactcttcccta |
916667 |
T |
|
| Q |
201 |
cttacatttttgcataattgcac--------ctctcatttcaaaccccataaaagctcttgttgaacaacaaacacttgcttgtgcttgaagtaacaact |
292 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
916666 |
cttacatttttgcataattgcacctctttttctctcatttcaaacaccataaaagctcttgttgaacaacaaacacttgcttgtgcttgaaggaccaact |
916567 |
T |
|
| Q |
293 |
aacaacacaatcaatcccaaattagaaaactcagcaatataccagatataaataaaacccttctttgtcatcactcgtcattgaacttgaatccaaccaa |
392 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
916566 |
aacaacacaatcaatcccaaattagaaaactcagcaacataccagatataaataaaacccttctttgtcatcactcatcattgaacttgaatccaaccaa |
916467 |
T |
|
| Q |
393 |
aataactaactaacacgtgggttgcaatattctgt |
427 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
916466 |
aataactaactaacacgtgggttgcaatattctgt |
916432 |
T |
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