View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13350_high_3 (Length: 393)
Name: NF13350_high_3
Description: NF13350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13350_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 17581908 - 17582161
Alignment:
| Q |
29 |
agcagaatcattgctaaccttcgtaacaaaaacaaatcactggtcatttgataaatatgccaagttagataattttatgatgactgatgagaggtctgtc |
128 |
Q |
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| T |
17581908 |
agcagaatcattgctaaccttcgtaacaaaaacaaatcactggt--------aaatatgctaagttagataattttatgatgactgatgagaggtctgtc |
17581999 |
T |
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| Q |
129 |
cttgcctgataattttattaggcaaggagttttcatcatcaaactgttacgattgactgtcggtatnnnnnnntgtttacagtgaaaggtatatctgaat |
228 |
Q |
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| T |
17582000 |
cttgcctgataattttattaggcaaggagttttcatcatcaaactgttacgattgaccgtcgttataaaaaaatgtttacagtgaaaggtatatctgaat |
17582099 |
T |
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| Q |
229 |
taaatcaaaataaaaaatgatggttcaagagttttgctttctcatccaatatggtaactgca |
290 |
Q |
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| T |
17582100 |
taaatcaaaataaaaaatgatagttcaagagttttgctttctcatccaatatggtaactgca |
17582161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 17582163 - 17582201
Alignment:
| Q |
318 |
ccattttggaggttgcccctaagatagcacaggttctgc |
356 |
Q |
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| T |
17582163 |
ccattttggaggttgcccctaagatagcacaagttctgc |
17582201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 204 - 348
Target Start/End: Complemental strand, 14745292 - 14745143
Alignment:
| Q |
204 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatccaat----atggtaactgcagtataatct |
299 |
Q |
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| T |
14745292 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatgcaatatgcatggtaactgtagtctagtct |
14745193 |
T |
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| Q |
300 |
acc-cacgtgaaaagcaagccattttggaggttgcccctaagatagcaca |
348 |
Q |
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| T |
14745192 |
acctcacttgaaaagcaagccattttggaggttgcccctaagatagcaca |
14745143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 53896354 - 53896391
Alignment:
| Q |
148 |
aggcaaggagttttcatcatcaaactgttacgattgac |
185 |
Q |
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| T |
53896354 |
aggcaaggagttttcaccaacaaactgttacgattgac |
53896391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 53896417 - 53896445
Alignment:
| Q |
208 |
cagtgaaaggtatatctgaattaaatcaa |
236 |
Q |
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| T |
53896417 |
cagtgaaaggtatatctgaattaaatcaa |
53896445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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