View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13350_high_5 (Length: 315)
Name: NF13350_high_5
Description: NF13350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13350_high_5 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 2861168 - 2860868
Alignment:
| Q |
1 |
tcttggtgctaactcgagtcaaagagccaaaagacttaaagccgaagttgtggaagatagccaatcaccgcttgtccttagcatggacgacaaagaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2861168 |
tcttggtgctaactcgagtcaaagagccaagagacttaaagccgaagttgtggaagatagccaatcaccgcttgtccttagcatggacgacaaagaagag |
2861069 |
T |
|
| Q |
101 |
attgaggatgagttcaatggactcaaagtttggtggtcttcaaatagcaatggtccaacaagaaaagcatcttcaggaagacctaattttgacgtggtaa |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
2861068 |
attgaggatgagttcaatggagtcaaagtttggtggtcttcaaacagcaaagctccaacaagaaaagcatcttcaggaagacctaatttcgatgtggtaa |
2860969 |
T |
|
| Q |
201 |
gatacttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2860968 |
gatacttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaacaaggaaaggctattatatttaagaa |
2860869 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
2860868 |
t |
2860868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 2866547 - 2866247
Alignment:
| Q |
1 |
tcttggtgctaactcgagtcaaagagccaaaagacttaaagccgaagttgtggaagatagccaatcaccgcttgtccttagcatggacgacaaagaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2866547 |
tcttggtgctaactcgagtcaaagagccaagagacttaaagccgaagttgtggaagatagccaatcaccgcttgtccttagcatggacgacaaagaagag |
2866448 |
T |
|
| Q |
101 |
attgaggatgagttcaatggactcaaagtttggtggtcttcaaatagcaatggtccaacaagaaaagcatcttcaggaagacctaattttgacgtggtaa |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
2866447 |
attgaggatgagttcaatggagtcaaagtttggtggtcttcaaacagcaaagctccaacaagaaaagcatcttcaggaagacctaatttcgatgtggtaa |
2866348 |
T |
|
| Q |
201 |
gatacttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
2866347 |
gatacttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctgttatatttaagaa |
2866248 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
2866247 |
t |
2866247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 2885734 - 2885437
Alignment:
| Q |
1 |
tcttggtgctaactcgagtcaaagagccaaaagacttaaagccgaagttgtggaagatagccaatcaccgcttgtccttagcatggacgacaaagaagag |
100 |
Q |
| |
|
||||||||| ||||||||| || |||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
2885734 |
tcttggtgcgaactcgagtaaacgagccaaacgacttgaagccgaagttgtggaagatagccaatccccgcttgtccttagcatggacgacaacgaagag |
2885635 |
T |
|
| Q |
101 |
attgaggatgagttcaatggactcaaagtttggtggtcttcaaatagcaatggtccaacaagaaaagcatcttcaggaagacctaattttgacgtggtaa |
200 |
Q |
| |
|
|| || ||||||||||||||| ||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||| | ||| || ||||||| |
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|
| T |
2885634 |
atcgaagatgagttcaatggagtcaaagtttggtggtctgcaaatagcaaagctccaagaagaaaagcatcttcaggaagatc---tttcgatgtggtaa |
2885538 |
T |
|
| Q |
201 |
gatacttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaa |
300 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2885537 |
gatgcttcaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaacaaggaaaggctattatatttaagaa |
2885438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 2841947 - 2842036
Alignment:
| Q |
199 |
aagatacttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctat |
288 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
2841947 |
aagattcttaaccctaactttccataaaaggcatcgtgaactcatcactacctcttacatacaacatgttttggaacaaggaaaggctat |
2842036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 282
Target Start/End: Complemental strand, 2910558 - 2910316
Alignment:
| Q |
40 |
agccgaagttgtggaagatagccaatcaccgcttgtccttagcatggacgacaaagaagagattgaggatgagttcaatggactcaaagtttggtggtct |
139 |
Q |
| |
|
|||| ||||||| |||||||||||| | ||| || || || |||| |||||||| |||||||| ||||| || || ||| || || ||||||||||| |
|
|
| T |
2910558 |
agccaaagttgtcgaagatagccaaactccggttatctttggcatagacgacaacgaagagatcaccgatgattttaaaggagtcgaaatttggtggtct |
2910459 |
T |
|
| Q |
140 |
tcaaatagcaatggtccaacaagaaaagcatcttcaggaagacctaattttgacgtggtaagatacttaaccctaactttccacaaaaggcatcgcgatc |
239 |
Q |
| |
|
|||| |||| |||||| | ||| || ||||||||||||||||| || ||| |||||||| |||||||||| ||| ||||||||||| | |||| |
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|
| T |
2910458 |
gcaaacagcacaattccaacggcacaagaattttcaggaagacctaattcggatgtgataagatacctaaccctaaccttcgacaaaaggcatggtgatc |
2910359 |
T |
|
| Q |
240 |
tcattacttcctcttacatacaacatgtgttggaccaaggaaa |
282 |
Q |
| |
|
|||| ||| |||| ||||| ||||||||||| || |||||||| |
|
|
| T |
2910358 |
tcatcactacctcgtacatccaacatgtgttagaacaaggaaa |
2910316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 2833852 - 2833736
Alignment:
| Q |
20 |
caaagagccaaaagacttaaagccgaagttgtggaagatagccaatcaccgcttgtccttagcatggacgacaaagaagagattgaggatgagttcaatg |
119 |
Q |
| |
|
|||||||| | |||||||||||| |||||||| ||||||||||| || |||||||| |||||||| || || ||||| || ||||||||||||| |
|
|
| T |
2833852 |
caaagagctagaagacttaaagctgaagttgtcaaagatagccaaaacccacttgtcctaagcatggatgataatgaagaaatcatagatgagttcaatg |
2833753 |
T |
|
| Q |
120 |
gactcaaagtttggtgg |
136 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
2833752 |
gagtcaaagtttggtgg |
2833736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 291
Target Start/End: Complemental strand, 2833673 - 2833581
Alignment:
| Q |
199 |
aagatacttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattat |
291 |
Q |
| |
|
||||| |||||||||||| ||||| |||| |||||| || |||| ||| |||||||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
2833673 |
aagattcttaaccctaaccttccataaaaagcatcgtgaagtcatcactacctcttacattcaacatgtgttggatgaaggaaaatctattat |
2833581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 14577694 - 14577778
Alignment:
| Q |
205 |
cttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctatt |
289 |
Q |
| |
|
|||||| ||||| |||||||||||| | || | |||||| ||| |||||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
14577694 |
cttaacactaaccttccacaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaaagctatt |
14577778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 2841768 - 2841886
Alignment:
| Q |
20 |
caaagagccaaaagacttaaagccgaagttgtggaagatagccaatcaccgcttgtccttagcatggacgacaaagaagagattgaggatgagttcaatg |
119 |
Q |
| |
|
|||||||| | |||||||||||| |||||| | ||||||||||| || ||||| || |||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
2841768 |
caaagagctagaagacttaaagctgaagttatcaaagatagccaaaatccacttgttctaagcatggatgacaaccaagagatcacagatgagttcaatg |
2841867 |
T |
|
| Q |
120 |
gactcaaagtttggtggtc |
138 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
2841868 |
gtgtcaaagtttggtggtc |
2841886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 2828590 - 2828686
Alignment:
| Q |
205 |
cttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaat |
301 |
Q |
| |
|
|||||||||||| |||||||||| |||| || || |||||| ||||| || ||||||||||| || |||||||||||||||| ||| |||||| |
|
|
| T |
2828590 |
cttaaccctaaccttccacaaaaaatatcgtgagcttattactaggtcttatatccaacatgtgttagaacaaggaaaggctattacattgaagaat |
2828686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 14577534 - 14577591
Alignment:
| Q |
21 |
aaagagccaaaagacttaaagccgaagttgtggaagatagccaatcaccgcttgtcct |
78 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||| |||| ||| | ||||||||||| |
|
|
| T |
14577534 |
aaagagccaaaagacttaatgctgaagttgtcgaaaatagtcaaaccccgcttgtcct |
14577591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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