View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13351_high_13 (Length: 239)
Name: NF13351_high_13
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13351_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 26633044 - 26632906
Alignment:
| Q |
12 |
atcatcctcaatttgtcttgtaatcttaatttgttcttgcattttgtcaaccaacttttgaattctctcagtcaagtgcttcttggcatcctgccatcaa |
111 |
Q |
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| T |
26633044 |
atcatcctcaatttgtcttgtaatcttaatttgttcttgcattttgtcaaccaacttctgaattctctcagtcaagtgcttcttggcatcctgccatcaa |
26632945 |
T |
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| Q |
112 |
aatcattgagaagtaattaaaacttaaaagagacatcaa |
150 |
Q |
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| T |
26632944 |
aatcactgagaagtaattaaaacttaaaagagacatcaa |
26632906 |
T |
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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 217
Target Start/End: Original strand, 16935905 - 16936076
Alignment:
| Q |
50 |
gcattttgtcaaccaacttttgaattctctcagtcaagtgcttcttggcatcctgccatcaaaatcat------tgagaagtaattaaaacttaaaagag |
143 |
Q |
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| T |
16935905 |
gcattttgtcatccaaaatttgaattctctgggtcaagtgcttcttagcatcctgccatgaaaaacatgaacattgagaagcaattaaaatttaaaagg- |
16936003 |
T |
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| Q |
144 |
acatcaactataactattaatacatttaagcatcaatttctatgttaaatatttgaattgagtgcataatgatg |
217 |
Q |
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| T |
16936004 |
-catcaaatatgattactactacatttaagcatcaattcccatgttaaatctttgaattgagtgcataatgatg |
16936076 |
T |
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