View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13351_high_7 (Length: 387)
Name: NF13351_high_7
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13351_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 3822535 - 3822721
Alignment:
| Q |
18 |
aactattacacacaatagggaattaagctacatgacccaaacttatatgatgtcatttagtggcagggattatatcatcatctatattcaattcaggggc |
117 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| || |
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| T |
3822535 |
aactattacacacaatagggaattaagctgcatgactcaaacttatatgctgtcatttagtggcagggaacatattatcatctatattcaattcaggtgc |
3822634 |
T |
|
| Q |
118 |
ctagaaactatagtgctaggggacaggtttcatcaacattgatatattttcttggttccaattttctaatattcatactcctcttaca |
205 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3822635 |
ctagaaactatagtgctaggtgacaggtttcatcaacattgatatattttcttggttccaa-tttctaatattcatactcctcttaca |
3822721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 238 - 382
Target Start/End: Original strand, 3822751 - 3822895
Alignment:
| Q |
238 |
aacaaatattcaatgcatcattagacaggggtaaaggagttatatgtatgattgtgattctcttgagattcccattagaaccaagatacttgccttaatg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3822751 |
aacaaatattcaatgcatcattagacaggggtaaaggagttatatgtatgattgtgattctcttgagattcccattagaaccaagatacttgccttaatg |
3822850 |
T |
|
| Q |
338 |
catgttattcactatatccctccatctcttctatcttcatctcac |
382 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
3822851 |
catgttattcactatatccttccatctcttctatcttcatgtcac |
3822895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 55859491 - 55859306
Alignment:
| Q |
18 |
aactattacacacaatagggaattaagctacatgacccaaacttatatgatgtcatttagtggcagggattatatcatcatctatattcaattcaggggc |
117 |
Q |
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|||| |||||||||||| | ||||||||| || ||| |||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| || |
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| T |
55859491 |
aactgttacacacaataag-aattaagctgcaagactcaaacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgc |
55859393 |
T |
|
| Q |
118 |
ctagaaactatagtgctaggggacaggtttcatcaacattgatatattttcttggttccaattttctaatattcatactcctcttaca |
205 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
55859392 |
ctagaaaccatagtgctaggtgacaggtttcatcaacattgatatattttcttggttccaa-tttcaaatattcatactcctcttaca |
55859306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 238 - 382
Target Start/End: Complemental strand, 55859282 - 55859138
Alignment:
| Q |
238 |
aacaaatattcaatgcatcattagacaggggtaaaggagttatatgtatgattgtgattctcttgagattcccattagaaccaagatacttgccttaatg |
337 |
Q |
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||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
55859282 |
aacaattactcaatgcatcattagacaaaggtaaaggagttatatgtatgattgtgattctcttgagatacccattagaaccaagatacttgccttaatg |
55859183 |
T |
|
| Q |
338 |
catgttattcactatatccctccatctcttctatcttcatctcac |
382 |
Q |
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||||||||||||||||||| ||||| | |||||||||||| |||| |
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|
| T |
55859182 |
catgttattcactatatccttccatatattctatcttcatgtcac |
55859138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 35204135 - 35204328
Alignment:
| Q |
18 |
aactattacacacaatagggaattaagctacatgacccaaacttatatgatgtcatttagtggcagggattatatcatcatctatattcaattcaggggc |
117 |
Q |
| |
|
|||| |||||||||||||| ||||||||| || ||| |||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| || |
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| T |
35204135 |
aactgttacacacaatagg-aattaagctgcaagactcaaacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgc |
35204233 |
T |
|
| Q |
118 |
ctagaaactatagtgctagg----ggacaggtttcatc----aacattgatatattttcttggttccaattttctaatattcatactcctcttaca |
205 |
Q |
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|||||||| ||| ||||||| ||||||||| ||| |||| | |||||||||||||||||||| ||| ||||||||||||||| ||||| |
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|
| T |
35204234 |
ctagaaaccataatgctaggtgcatgacaggttttatcaacaaacactcatatattttcttggttccaa-cttccaatattcatactcctattaca |
35204328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 238 - 382
Target Start/End: Complemental strand, 46267267 - 46267123
Alignment:
| Q |
238 |
aacaaatattcaatgcatcattagacaggggtaaaggagttatatgtatgattgtgattctcttgagattcccattagaaccaagatacttgccttaatg |
337 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
46267267 |
aacaattattcaatgcatcattagacaaaggtaaaggagttatatgtatgattgtgattctcttgggattcacattagaaccaagatacttgccttaatg |
46267168 |
T |
|
| Q |
338 |
catgttattcactatatccctccatctcttctatcttcatctcac |
382 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||| |||| |
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|
| T |
46267167 |
catgttattcactatatccttccatctattctatcttcatgtcac |
46267123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 46267466 - 46267293
Alignment:
| Q |
18 |
aactattacacacaatagggaattaagctacatgacccaaacttatatgatgtcatttagtggcagggattatatcatcatctatattcaattcaggggc |
117 |
Q |
| |
|
|||| |||||||||||||| ||||||||| || ||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||| || |
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| T |
46267466 |
aactgttacacacaatagg-aattaagctgcaagactcaaacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaatgcaggtgc |
46267368 |
T |
|
| Q |
118 |
ctagaaactatagtgctaggggacaggtttcatcaacattgatatattttcttggttccaattttctaatattcatactcctcttaca |
205 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
46267367 |
ctagaaaccatagtgctaggtgacaggttt------------tatattttcttggttccaa-tttctaatattcatactcctcttaca |
46267293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 238 - 382
Target Start/End: Original strand, 29275316 - 29275460
Alignment:
| Q |
238 |
aacaaatattcaatgcatcattagacaggggtaaaggagttatatgtatgattgtgattctcttgagattcccattagaaccaagatacttgccttaatg |
337 |
Q |
| |
|
||||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
29275316 |
aacaattactcaatgtatcattagacaaaggtaaaggagttatatgtatgattgtgattctcttgagatacccattagaaccaagatacttgccttaatg |
29275415 |
T |
|
| Q |
338 |
catgttattcactatatccctccatctcttctatcttcatctcac |
382 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||||||| |||| |
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|
| T |
29275416 |
catgttattcactatatccttccatatattctatcttcatgtcac |
29275460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 29275107 - 29275292
Alignment:
| Q |
18 |
aactattacacacaatagggaattaagctacatgacccaaacttatatgatgtcatttagtggcagggattatatcatcatctatattcaattcaggggc |
117 |
Q |
| |
|
|||| |||||||||||||| ||||||||| || ||| |||||||||||| ||||||||||||||| ||| || ||||||||||||||||||||||| | |
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|
| T |
29275107 |
aactgttacacacaatagg-aattaagctgcaagactcaaacttatatgttgtcatttagtggcaaggaacatttcatcatctatattcaattcaggtga |
29275205 |
T |
|
| Q |
118 |
ctagaaactatagtgctaggggacaggtttcatcaacattgatatattttcttggttccaattttctaatattcatactcctcttaca |
205 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||| ||||| |||| |||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
29275206 |
ctagaaaccatagtgctaggtgacaggtttcatcaacatagatatttttttttggttccaa-tttcaaatattcacactcctcttaca |
29275292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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