View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13351_high_9 (Length: 335)
Name: NF13351_high_9
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13351_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 185 - 327
Target Start/End: Original strand, 53175165 - 53175307
Alignment:
| Q |
185 |
caaacaagtcttaatcacctgagttgaagccattggtagcatcaaacaactcttcataagagaaacatttccaagttggtctttgacaagtttcttcttc |
284 |
Q |
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| T |
53175165 |
caaacaagtcttaatcacctgagttgaagccattggtagcatcaaacaactcttcataagagaaacatttccatgttggtttttgacaagtttcttcttc |
53175264 |
T |
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| Q |
285 |
atatggaagaatcttcaagctcttttcattttcttcacctttg |
327 |
Q |
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| T |
53175265 |
atatggaagaatcttcaagctcttttcattttcttcacctttg |
53175307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 53174982 - 53175081
Alignment:
| Q |
7 |
ctttgaagctcttgttaatctcttcacagcaatttcttcaccatttttcaatgttcccttgtaaacctcagcataaccaccttttccaaccatattttct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53174982 |
ctttgaagctcttgttaatctcttcacagcaatttcttcaccatttttcaatgttcccttgtaaacctcagcataaccaccttttccaaccatattttct |
53175081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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