View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13351_low_1 (Length: 638)
Name: NF13351_low_1
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13351_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 17 - 631
Target Start/End: Complemental strand, 43453583 - 43452969
Alignment:
| Q |
17 |
acaatggttagagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaatcaattgccataagagtggaat |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453583 |
acaatggttagagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaatcaattgccataagagtggaat |
43453484 |
T |
|
| Q |
117 |
cttcatctccatcaacaaaaaggaaattttcaggcttaagatcacgatgcataactccacatgagtgacaagcctcaacaacattaacaatcgttcttgc |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43453483 |
cttcatctccatcaacaaaaaggaaattttcaggcttaagatcacgatgcataactccacgtgagtgacaagcctcaacaacattaacaatcgttcttgc |
43453384 |
T |
|
| Q |
217 |
gagtttagcagcctttctctcggtgtaatgtctcctttccacaatcctgtcaaacaactcacctccttcacataattccattacaatataaacaacgacc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453383 |
gagtttagcagcctttctctcggtgtaatgtctcctttccacaatcctgtcaaacaactcacctccttcacataattccattacaatataaacaacgacc |
43453284 |
T |
|
| Q |
317 |
ggatcttcataagctccttttattgatatcacatttggaatcccaactaagtgatgcattatttcaatctccctcctcacatcctctatatcattctctc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43453283 |
ggatcttcataagctccttttattgatatcacatttggaatcccaactaagtgatgcattatttcaatctccctcctcacatcctctatatcattctctc |
43453184 |
T |
|
| Q |
417 |
taaacaattttacctttggtattgctttgcatgcgtatgtcttcccggttgatttctccaaacaaagtgaagtagttccaaactttcctttcccaagttc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43453183 |
taaacaattttacctttggtattgctttgcatgcgtatgtcttcctggttgatttctccaaacaaagtgaagtagttccaaactttcctttcccaagttc |
43453084 |
T |
|
| Q |
517 |
atctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaaccgattctgctcgaagacctgcactttttggtgttaccctcctaatatta |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453083 |
atctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaaccgattctgctcgaagacctgcactttttggtgttaccctcctaatatta |
43452984 |
T |
|
| Q |
617 |
atattcttcgacatc |
631 |
Q |
| |
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||||| || |||||| |
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| T |
43452983 |
atattttttgacatc |
43452969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 606
Target Start/End: Complemental strand, 43463020 - 43462433
Alignment:
| Q |
19 |
aatggttagagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaatcaattgccataagagtggaatct |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||| ||||||| |||||| |
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|
| T |
43463020 |
aatggttagagattggtataaattggagaaggggattatttccatacctggtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatct |
43462921 |
T |
|
| Q |
119 |
tcatctccatcaacaaaaaggaaattttcaggcttaagatcacgatgcataactccacatgagtgacaagcctcaacaacattaacaatcgttcttgcga |
218 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||| || |||||||| | |
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|
| T |
43462920 |
tcatgtccatcaacaaaaagaaaattttcaggcttaagatcacaatgcataactccacgtgagtgacaagtctcaacaacactaacgatagttcttgcaa |
43462821 |
T |
|
| Q |
219 |
gtttagcagcctttctctcggtgtaatgtctcctttccacaatcctgtcaaacaactcacctccttcacataattccattacaatataaacaacgaccgg |
318 |
Q |
| |
|
||||||| |||||| |||| ||| | | |||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| | | |
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|
| T |
43462820 |
gtttagcggccttttgttcggcgtagtaacctcttttcacaatcctatcaaacaactcacctcctttacataattccatgacaatataaacaacatcaga |
43462721 |
T |
|
| Q |
319 |
atcttcataagctccttttattgatatcacatttggaatcccaactaagtgatgcattatttcaatctccctcctcacatcctctatatcattctctcta |
418 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| || ||||||| |||||||||||||| | ||| ||||||||||||||||||| ||||| ||| |
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|
| T |
43462720 |
atcttcataaactccttttatacatatcacatttagactcccaaccaagtgatgcattatcttaatttccctcctcacatcctctacatcatcatcttct |
43462621 |
T |
|
| Q |
419 |
aacaattttacctttggtattgctttgcatgcgtatgtcttcccggttgatttctccaaacaaagtgaagtagttccaaactttcctttcccaagttcat |
518 |
Q |
| |
|
|||||||| |||||||| ||| | |||||||| || || ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| |
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| T |
43462620 |
aacaatttcacctttgggattaccttgcatgcatacgttttcccggttgatttctccaaacaaagtgaagtagttccaaattccccttctccaagttcat |
43462521 |
T |
|
| Q |
519 |
ctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaaccgattctgctcgaagacctgcactttttggtgttaccct |
606 |
Q |
| |
|
||||||||| ||| ||||| |||||| ||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
43462520 |
ctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaattgattcttctcgaagacctgcactttttgctgttaccct |
43462433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 399
Target Start/End: Original strand, 24420812 - 24421081
Alignment:
| Q |
130 |
aacaaaaaggaaattttcaggcttaagatcacgatgcataactccacatgagtgacaagcctcaacaacattaacaatcgttcttgcgagtttagcagcc |
229 |
Q |
| |
|
||||||||| ||||| || ||||||||||| |||||||| || ||| || ||||| | || || |||| |||||| || ||||| ||||| || ||| |
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|
| T |
24420812 |
aacaaaaagaaaattctccggcttaagatcgcgatgcattacaccaagagaatgacatgactgaataacaccaacaatagtccttgcaagtttcgccgcc |
24420911 |
T |
|
| Q |
230 |
tttctctcggtgtaatgtctcctttccacaatcctgtcaaacaactcacctccttcacataattccattacaatataaacaacgaccggatcttcataag |
329 |
Q |
| |
|
||||| || || ||||| | |||||||||||||| ||||| | ||||| ||| |||| || ||||| |||| || |||| | || | ||| ||| ||| |
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|
| T |
24420912 |
tttctttctgtataatgccctctttccacaatcctatcaaaaagttcaccacctgcacacaactccataacaacatgaacagcaacagcatcctcagaag |
24421011 |
T |
|
| Q |
330 |
ctccttttattgatatcacatttggaatcccaactaagtgatgcattatttcaatctccctcctcacatc |
399 |
Q |
| |
|
|| | || || || |||||||| | | | ||| | ||||||||||| || | |||||| ||||||||||| |
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|
| T |
24421012 |
cttccttaatcgaaatcacattcgaactgccagccaagtgatgcataatctgaatctctctcctcacatc |
24421081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 8403628 - 8403596
Alignment:
| Q |
139 |
gaaattttcaggcttaagatcacgatgcataac |
171 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
8403628 |
gaaattctcaggcttaagatcacgatgcataac |
8403596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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