View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13351_low_11 (Length: 295)
Name: NF13351_low_11
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13351_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 9400781 - 9400545
Alignment:
| Q |
15 |
atatgtgtcgtttggtctaactagagtaagcttgctaagctgtatagaatatatacagctttgcaaactgagaaagttttgatttcagcttgtttcaggg |
114 |
Q |
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| T |
9400781 |
atatgtgtcgtttggtctaactagagtaagcttgctaagctgtatagaatatatacagctttgcaaactgagaaagttttgatttcagcttgtttcaggg |
9400682 |
T |
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| Q |
115 |
gctgaatagagcatccgcagtctgtctccactgttgtgcgcctgttctcctgtttcaattagttttttcctaggtctcgggtctgctttgcactgagtag |
214 |
Q |
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| T |
9400681 |
gctgattagagcatccgcagtccgtctccactgttgtgcgcctgttctcctgtttcaattagttttttcctaggtctcaggtctgctttgcactgagtag |
9400582 |
T |
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| Q |
215 |
attgtatcagtgttttgcagtctgtcaggtgcacctg |
251 |
Q |
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| T |
9400581 |
attgtatcagtgttttgcagtctgtcaggtgcacctg |
9400545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 9419332 - 9419092
Alignment:
| Q |
15 |
atatgtgtcgtttggtctaactagagtaagcttgctaagctgtatagaatatatacagctttgcaaactgagaaagttttgatttcagcttgtttcaggg |
114 |
Q |
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| T |
9419332 |
atatgtgtcgtttggtctaactagagtaagcttgctaagctgcatagaatatatacagctttgcaaactgagaaagttgtgatttcagcttgtttcaggg |
9419233 |
T |
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| Q |
115 |
gctgaatagagcatccgcagtctgtctccactgttgtgcgcctgttctcctgtttcaattagttttttcctaggtctcgggtctgctttgcactgagtag |
214 |
Q |
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| T |
9419232 |
gctgattagagcatccgcagtccgtctccactgttgtgcgcctgttctcctgtttcaattggttttttcctagggctcgggtctgctttgcactgagtag |
9419133 |
T |
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| Q |
215 |
attgtatcagtgttttgcagtctgtcaggtgcacctgtgct |
255 |
Q |
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| T |
9419132 |
attgtatcagtgttttgtagtctgtcaggtgcacctgtgct |
9419092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 9431635 - 9431491
Alignment:
| Q |
25 |
tttggtctaactagagtaagcttgctaagctgtatagaatatatacagctttgcaaactgagaaagttttgatttcagcttgtttcaggggctgaataga |
124 |
Q |
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| T |
9431635 |
tttggtctaactagagtatgctagctaagctgtatagagtatagacagcttttcaatctgagaatgctgtgatttcagcttgtttcaggggctgattaga |
9431536 |
T |
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| Q |
125 |
gcatccgcagtctgtctccactgttgtgcgcctgttctcctgttt |
169 |
Q |
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| T |
9431535 |
gcatcctcagtccgtctccacttctgtgcaagtgttctcctgttt |
9431491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 9410636 - 9410479
Alignment:
| Q |
15 |
atatgtgtcgtttggtctaactagagtaagcttgctaagctgtatagaatatatacagctttgcaaactgagaaagttttgatttcagc----------t |
104 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| | | |||||||||| | |
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| T |
9410636 |
atatgtgtcttttggtctaactagagtaagctagctaagctgtatagagtatagacagctttgcaaactgagaatgctgtgatttcagctagttgggagt |
9410537 |
T |
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| Q |
105 |
tgtttcaggggctgaatagagcatccgcagtctgtctccactgttgtgcgcctgttct |
162 |
Q |
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| T |
9410536 |
tgtttcaggggctgatttgagcatccgcagtccgtctccgctgttgtgcacgtgttct |
9410479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 9410476 - 9410423
Alignment:
| Q |
194 |
ggtctgctttgcactgagtagattgtatcagtgttttgcagtctgtcaggtgca |
247 |
Q |
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| T |
9410476 |
ggtctgctttgcactgagtagattgtatcagtgttttgcagtctgttaggtgca |
9410423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 9431491 - 9431445
Alignment:
| Q |
208 |
tgagtagattgtatcagtgttttgcagtctgtcaggtgcacctgtgc |
254 |
Q |
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| T |
9431491 |
tgagtagattgaatcactgttttgcagtctgtcaggtgcacctgtgc |
9431445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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