View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13351_low_12 (Length: 288)
Name: NF13351_low_12
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13351_low_12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 115 - 288
Target Start/End: Original strand, 29024550 - 29024723
Alignment:
| Q |
115 |
ttgagttgctactatcatcatccatgtcttcctcttcaacaacaagttcttcagcgacatcattatcatcatcaactaatggttcttcagcaaaataatt |
214 |
Q |
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| T |
29024550 |
ttgagttgctactatcatcatccatgtcttcctcttcaacaacaagttcttcagcgacatcattatcatcatcaactaatggttcttcagcaaaataatt |
29024649 |
T |
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| Q |
215 |
ttcatcagtcatataatcaaaagcaggtagaatttgcgcaattatttgagcaacaaaatcttcttcagaaaaat |
288 |
Q |
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| T |
29024650 |
ttcatcagtcatataatgaaaagaaggtagaacgtgcacaattatttgagcaacaaaatcttcttcagaaaaat |
29024723 |
T |
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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 29024361 - 29024422
Alignment:
| Q |
11 |
acataagtaatgagaggatcccatggtccatacataatcaaaatactcataacaaaaataaact |
74 |
Q |
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| T |
29024361 |
acataagtaatgag--gatcccatgttccatacataatcaaaatactcacaacaaaaataaact |
29024422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 36067216 - 36067288
Alignment:
| Q |
115 |
ttgagttgctactatcatcatccatgtcttcctcttcaacaacaagttcttcagcgacatcattatcatcatc |
187 |
Q |
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| T |
36067216 |
ttgagttgctactatcatcatcactattatcctcttcaacaacaagttcatcagcaacatcattatcatcatc |
36067288 |
T |
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