View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13351_low_2 (Length: 601)
Name: NF13351_low_2
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13351_low_2 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 51252 - 50650
Alignment:
| Q |
1 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaagctaaagagatggnnnnnnnntgtattcaacccaattagggggcgaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51252 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaagctaaagagatggaaaaaaa-tgtattcaacccaattagggggcgaagaa |
51154 |
T |
|
| Q |
101 |
gtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaact |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51153 |
gtgttaaagagtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaact |
51054 |
T |
|
| Q |
201 |
gccatacacatatcagaacttaagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatctgaaatgcatcc--------------taaa |
286 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
51053 |
gccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccaccgcaaagattcctaaa |
50954 |
T |
|
| Q |
287 |
atgccatggatcgtgattgaagattcaaagtaatcaaggagcagtatttcgtaatattagctatgccgacatgtcttaagtgaaaccattttggctatct |
386 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||||| |||| |||||||||||||||||||||| |
|
|
| T |
50953 |
atgccatggatcatgattgaagattcaaagtaatcaaggagcattatttggtaatattagttatgtcgacatctctttagtgaaaccattttggctatct |
50854 |
T |
|
| Q |
387 |
aattgtttgttgtccctttctgagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaa |
486 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50853 |
aattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaa |
50754 |
T |
|
| Q |
487 |
atttgtatttgcaccttttgctggattggcattaattaagtatgttttgtttttaagcttgaatcttggatttgatattactttagagtaaaccatgtga |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50753 |
atttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagcttgaatcttggatttaatattactttagagtaaaccatgtga |
50654 |
T |
|
| Q |
587 |
atct |
590 |
Q |
| |
|
|||| |
|
|
| T |
50653 |
atct |
50650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Original strand, 44498318 - 44498918
Alignment:
| Q |
1 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagatggnnnnnnnntgtattcaacccaattagggggcgaaga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
44498318 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaa-tgtattcaacccaactaggggg---aga |
44498413 |
T |
|
| Q |
100 |
agtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498414 |
agtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
44498513 |
T |
|
| Q |
200 |
tgccatacacatatcagaacttaagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatctgaaatgcatcc--------------taa |
285 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
44498514 |
tgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccaccgcaaagattcctaa |
44498613 |
T |
|
| Q |
286 |
aatgccatggatcgtgattgaagattcaaagtaatcaaggagcagtatttcgtaatattagctatgccgacatgtcttaagtgaaaccattttggctatc |
385 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||||| |||| ||||||||||||||||||||| |
|
|
| T |
44498614 |
aatgccatggatcatgattgaagattcaaagtaatcaaggagcattatttggtaatattagttatgtcgacatctctttagtgaaaccattttggctatc |
44498713 |
T |
|
| Q |
386 |
taattgtttgttgtccctttctgagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggataca |
485 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498714 |
taattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggataca |
44498813 |
T |
|
| Q |
486 |
aatttgtatttgcaccttttgctggattggcattaattaagtatgttttgtttttaagcttgaatcttggatttgatattactttagagtaaaccatgtg |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44498814 |
aatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagcttgaatcttggatttaatattactttagagtaaaccatgtg |
44498913 |
T |
|
| Q |
586 |
aatct |
590 |
Q |
| |
|
||||| |
|
|
| T |
44498914 |
aatct |
44498918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 6701 - 7291
Alignment:
| Q |
1 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagatggnnnnnnnntgtattcaacccaattagggggcgaaga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
6701 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaa-tgtattcaacccaattaggggg---aga |
6796 |
T |
|
| Q |
100 |
agtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6797 |
agtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
6896 |
T |
|
| Q |
200 |
tgccatacacatatcagaacttaagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatctgaaatgcatcc--------------taa |
285 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
6897 |
tgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccaccgcaaagagtcctaa |
6996 |
T |
|
| Q |
286 |
aatgccatggatcgtgattgaagattcaaagtaatcaaggagcagtatttcgtaatattagctatgccgacatgtcttaagtgaaaccattttggctatc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
6997 |
aatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattagttatgccgacatctctttagtgaaaccattttggctatc |
7096 |
T |
|
| Q |
386 |
taattgtttgttgtccctttctgagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggataca |
485 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7097 |
taattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggataca |
7196 |
T |
|
| Q |
486 |
aatttgtatttgcaccttttgctggattggcattaattaagtatgttttgtttttaagcttgaatcttggatttgatattactttagagtaaaccatgtg |
585 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7197 |
aatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagcttgaatcttggatttgatattactttagtgtaaaccatgtg |
7283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 16614 - 17204
Alignment:
| Q |
1 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagatggnnnnnnnntgtattcaacccaattagggggcgaaga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
16614 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaa-tgtattcaacccaattaggggg---aga |
16709 |
T |
|
| Q |
100 |
agtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16710 |
agtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
16809 |
T |
|
| Q |
200 |
tgccatacacatatcagaacttaagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatctgaaatgcatcc--------------taa |
285 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
16810 |
tgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccaccgcaaagagtcctaa |
16909 |
T |
|
| Q |
286 |
aatgccatggatcgtgattgaagattcaaagtaatcaaggagcagtatttcgtaatattagctatgccgacatgtcttaagtgaaaccattttggctatc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
16910 |
aatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattagttatgccgacatctctttagtgaaaccattttggctatc |
17009 |
T |
|
| Q |
386 |
taattgtttgttgtccctttctgagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggataca |
485 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17010 |
taattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggataca |
17109 |
T |
|
| Q |
486 |
aatttgtatttgcaccttttgctggattggcattaattaagtatgttttgtttttaagcttgaatcttggatttgatattactttagagtaaaccatgtg |
585 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17110 |
aatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagcttgaatcttggatttgatattactttagtgtaaaccatgtg |
17196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Complemental strand, 22368 - 21778
Alignment:
| Q |
1 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagatggnnnnnnnntgtattcaacccaattagggggcgaaga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
22368 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaa-tgtattcaacccaattaggggg---aga |
22273 |
T |
|
| Q |
100 |
agtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22272 |
agtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
22173 |
T |
|
| Q |
200 |
tgccatacacatatcagaacttaagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatctgaaatgcatcc--------------taa |
285 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
22172 |
tgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccaccgcaaagagtcctaa |
22073 |
T |
|
| Q |
286 |
aatgccatggatcgtgattgaagattcaaagtaatcaaggagcagtatttcgtaatattagctatgccgacatgtcttaagtgaaaccattttggctatc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
22072 |
aatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattagttatgccgacatctctttagtgaaaccattttggctatc |
21973 |
T |
|
| Q |
386 |
taattgtttgttgtccctttctgagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggataca |
485 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21972 |
taattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggataca |
21873 |
T |
|
| Q |
486 |
aatttgtatttgcaccttttgctggattggcattaattaagtatgttttgtttttaagcttgaatcttggatttgatattactttagagtaaaccatgtg |
585 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21872 |
aatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagcttgaatcttggatttgatattactttagtgtaaaccatgtg |
21786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 3380921 - 3381510
Alignment:
| Q |
1 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagatggnnnnnnnntgtattcaacccaattagggggcgaaga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
3380921 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaa-tgtattcaacccaattagggg----aga |
3381015 |
T |
|
| Q |
100 |
agtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381016 |
agtgttaaagggactaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
3381115 |
T |
|
| Q |
200 |
tgccatacacatatcagaacttaagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatctgaaatgcatcc-----------taaaat |
288 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
3381116 |
tgccaaacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccacctcgagtcctaaaat |
3381215 |
T |
|
| Q |
289 |
gccatggatcgtgattgaagattcaaagtaatcaaggagcagtatttcgtaatattagctatgccgacatgtcttaagtgaaaccattttggctatctaa |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3381216 |
gccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattagttatgccgacatgtctttagtgaaaccattttggctatctaa |
3381315 |
T |
|
| Q |
389 |
ttgtttgttgtccctttctgagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaagggctgggttaactattttggatacaaat |
488 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3381316 |
ttgtttgttg----------agttaaaattttccatttatggagttgtcatattttgtatgaaatatgtaagggctgggttaactattttagatacaaat |
3381405 |
T |
|
| Q |
489 |
ttgtatttgcaccttttgctggattggcattaattaagtatgttttgtttttaagcttgaatcttggatttgatattactttagagtaaaccatgtgaat |
588 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381406 |
ttgtatttgcaccttttgctggattggctttaactaagtatgttttgtttttaagcttgaatcttggatttgatattactttagagtaaaccatgtgaat |
3381505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 15708857 - 15709112
Alignment:
| Q |
1 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagatggnnnnnnnntgtattcaacccaattagggggcgaaga |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
15708857 |
ccaccctacgaccaaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaa-tgtattcaacccaattaggggg---aga |
15708952 |
T |
|
| Q |
100 |
agtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15708953 |
agtgttaaagggtctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaacaaagattttaac |
15709052 |
T |
|
| Q |
200 |
tgccatacacatatcagaacttaagaagcacttggattcctgctgatagaaaattagtgg |
259 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15709053 |
tgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtgg |
15709112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 75 - 218
Target Start/End: Complemental strand, 26795866 - 26795723
Alignment:
| Q |
75 |
attcaacccaattagggggcgaagaagtgttaaagggtctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaag |
174 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26795866 |
attcaacacaattaggggaagaagaagtgttaaagggtccaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaag |
26795767 |
T |
|
| Q |
175 |
ttgctgcaaaaacaaagattttaactgccatacacatatcagaa |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26795766 |
ttgctgcaaaaacaaaggttttaactgccatacacatatcagaa |
26795723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 552
Target Start/End: Complemental strand, 9200166 - 9200091
Alignment:
| Q |
475 |
ttttggatacaaatttgtatttgcaccttttgctggattggcattaattaagtatgttttgtttttaagcttgaatct |
552 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9200166 |
ttttggatccaaatttgtatt-gcaacttttt-tggattggctttagttaagtatgttttgtttttaagcttgaatct |
9200091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 552
Target Start/End: Complemental strand, 9201928 - 9201854
Alignment:
| Q |
475 |
ttttggatacaaatttgtatttgcaccttttgctggattggcattaattaagtatgttttgtttttaagcttgaatct |
552 |
Q |
| |
|
|||||||| |||||||||||| ||| |||| ||||||||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
9201928 |
ttttggatccaaatttgtatt-gcaattttt--tggattggctttagttaagtaggttttgtttttaagcttgaatct |
9201854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 6e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 357 - 522
Target Start/End: Complemental strand, 30112048 - 30111884
Alignment:
| Q |
357 |
atgtcttaagtgaaaccattttggctatctaattgtttgttgtccctttctgagttaaaattttccatttatggagttgtcatattttgtgtgaattatg |
456 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |||||| ||||||| |||| |||||||||||||||| | |||||||||||||||||||| ||| |
|
|
| T |
30112048 |
atgtctttagtgaaatcattttggctatctaatgttttgttcaccctttcgtagttgaaattttccatttatg-atttgtcatattttgtgtgaataatg |
30111950 |
T |
|
| Q |
457 |
taagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggcattaat |
522 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
30111949 |
taagggctgagttaactattttggatacaaatttgtatttgtaacttttgctggattggctttaat |
30111884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 532 - 588
Target Start/End: Complemental strand, 30110775 - 30110718
Alignment:
| Q |
532 |
tttgtttttaagcttgaatcttggatttgatatt-actttagagtaaaccatgtgaat |
588 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30110775 |
tttgtttttaagcttatatcttggatttgatattcactttagagtaaaccatgtgaat |
30110718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 30112168 - 30112132
Alignment:
| Q |
223 |
agaagcacttggattcctgctgatagaaaattagtgg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30112168 |
agaagcacttggattcctgctgatagaaaattagtgg |
30112132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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