View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13351_low_3 (Length: 589)
Name: NF13351_low_3
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13351_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 22 - 569
Target Start/End: Complemental strand, 29333753 - 29333206
Alignment:
| Q |
22 |
tagaatcttcacttcgcaaccctttcgaaccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaa |
121 |
Q |
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| T |
29333753 |
tagaatcttcccttcgcaaccctttcgaaccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaa |
29333654 |
T |
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| Q |
122 |
ccaagacgaatcactcctccatggcttcgaacttcaacaacacgtcgaaacgattcttcaatccaacgatctttcattgcttcaagaagtaatcgacgag |
221 |
Q |
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| T |
29333653 |
ccaagacgaatcactcctccatggcttcgaacttcaacaacacgtcgcaacgattcttcaatccaacgatctttcatcgcttcaagaagtaatcgacgag |
29333554 |
T |
|
| Q |
222 |
tacgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaat |
321 |
Q |
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| T |
29333553 |
tacgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaat |
29333454 |
T |
|
| Q |
322 |
ttcaacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatcttactcga |
421 |
Q |
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| T |
29333453 |
ttcaacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatcttactcga |
29333354 |
T |
|
| Q |
422 |
actgaagaatcctcttcttcattcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttac |
521 |
Q |
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| T |
29333353 |
actgaagaatcctcttcttcattcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttac |
29333254 |
T |
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| Q |
522 |
cggtgttctcttggtggttgggtggagcttcttgagtatgttctcgct |
569 |
Q |
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| T |
29333253 |
cggtgttctcttggtggttgggtggagcttcttgagtatgttctcgct |
29333206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 110 - 293
Target Start/End: Complemental strand, 29305285 - 29305102
Alignment:
| Q |
110 |
catcgaagaaaaccaagacgaatcactcctccatggcttcgaacttcaacaacacgtcgaaacgattcttcaatccaacgatctttcattgcttcaagaa |
209 |
Q |
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||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||| ||||| | |||| | ||||||||| || || | | | |||||| |
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| T |
29305285 |
catcgaagaaaaccaagacagatcactcatccacggcttcgaacttcgacaacacgccgaaaggtttctcctatccaacgacctctcgtcgttgcaagaa |
29305186 |
T |
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| Q |
210 |
gtaatcgacgagtacgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattc |
293 |
Q |
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| T |
29305185 |
gcaatcgatgaatactctcaaaccaggaatcaatctttattcacgattttcaaatctttcacacttcattatcctaacgcattc |
29305102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 29322533 - 29322419
Alignment:
| Q |
51 |
ccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctccatggcttcg |
150 |
Q |
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|||||||||||||| |||| |||||| |||||||||||||| | ||||| |||| ||||||||| | |||||||| |||||||| |||| ||| || |
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| T |
29322533 |
ccggatataaacccaccactgcgcaatcacttggaagaaataatgaacaagagaaggcgcatcgaacacaaccaagataaatcactcatccacggcctcc |
29322434 |
T |
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| Q |
151 |
aacttcaacaacacg |
165 |
Q |
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| T |
29322433 |
aacttcaagaacacg |
29322419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 525
Target Start/End: Complemental strand, 29322142 - 29322059
Alignment:
| Q |
442 |
attcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccggt |
525 |
Q |
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||||||| |||| ||||||||||| |||||||||| ||||||||||||| ||| |||||| | ||||| ||||| ||||||| |
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| T |
29322142 |
attcgctcaaggtagaatctgaagaaattctgtttccttcgctatgcgaaatgatgggtttattcgctgacaggttgtaccggt |
29322059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 29296069 - 29296005
Alignment:
| Q |
256 |
ttttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaa |
320 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||| || || || || ||||||||| |
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| T |
29296069 |
ttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaa |
29296005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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