View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13351_low_4 (Length: 550)

Name: NF13351_low_4
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13351_low_4
NF13351_low_4
[»] chr7 (3 HSPs)
chr7 (19-292)||(27511138-27511411)
chr7 (406-537)||(27510017-27510148)
chr7 (406-442)||(27510969-27511005)
[»] scaffold0016 (1 HSPs)
scaffold0016 (19-307)||(77818-78094)
[»] chr6 (2 HSPs)
chr6 (40-228)||(33702282-33702465)
chr6 (408-476)||(33702207-33702275)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 27511411 - 27511138
Alignment:
Q  19 attatatgcttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcaagagagatgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  27511411 attatatgcttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcgagagaggtgg 27511312  T
Q  119 tcgtgaatcctcttgcacgcatgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27511311 tcgtgaatcctcttgcacgcatgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcct 27511212  T
Q  219 aaaataaaggatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaaggttgaatagaagaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27511211 aaaataaaggatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaaggttgaatagaagaa 27511138  T

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Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 406 - 537
Target Start/End: Complemental strand, 27510148 - 27510017
Alignment:
Q  406 gatggtgatagactagtgttgctgtgttaaacattaatgactgcttgaaaattaatgaatttagcttttttataattctgatgttaaaatctcgaattaa 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27510148 gatggtgatagactagtgttgctgtgttaaacattaatgactgcttgaaaattaatgaatttagcttttttataattctgatgttaaaatatcgaattaa 27510049  T
Q  506 attctaaaataaaggattttgcgatattcttc 537  Q
    ||||||||||||||||||||||||| ||||||    
T  27510048 attctaaaataaaggattttgcgattttcttc 27510017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 27511005 - 27510969
Alignment:
Q  406 gatggtgatagactagtgttgctgtgttaaacattaa 442  Q
    |||||||||||||| |||||||||||||||| |||||    
T  27511005 gatggtgatagactggtgttgctgtgttaaatattaa 27510969  T

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Target: scaffold0016 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 77818 - 78094
Alignment:
Q  19 attatatgcttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcaagagagatgg 118  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||            |||||||| |||||||||||||||||  || ||| |||    
T  77818 attatatgcttatacgtatgtatatgcctggacgcattaaggaagatgtg------------tatcagaacactcttagcattaaaggtgagcgaggtgg 77905  T
Q  119 tcgtgaatcctcttgcacgcatgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcct 218  Q
    |||| |||||||| |||  | ||||||||| |||| ||||||||||||  || |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  77906 tcgtaaatcctctagcagacttgatttaaccgggaaacattacaagatttattagattacagctaagatgaaatgtagtgtgctcaaggttgttttgcct 78005  T
Q  219 aaaataaaggatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaaggttgaatagaagaatatggtattttcatt 307  Q
    ||||| ||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  78006 aaaatgaaggatggggaaactacagagggaaggaacaacaatgatgtgattattgtcaaggttgaatagaagaatatggtcttttcatt 78094  T

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Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 33702465 - 33702282
Alignment:
Q  40 atatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcaagagagatggtcgtgaatcctcttgcacgca 139  Q
    ||||||||| |||||| |||||||||||||||||||| ||||| ||     ||||||||||||||||| |||||| ||||||| ||||||||||||| |     
T  33702465 atatgcctgaacgcttgaaggaagatgtgaatatcaatgtgtaaca-----ctcttagcattaaaggcgagagaggtggtcgtaaatcctcttgcacact 33702371  T
Q  140 tgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaagg 228  Q
    ||||||||| |||| |  ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  33702370 tgatttaacagggaaatcttacaagattgatcagattagagctaagatgaaatgtagtgtgctcaaggttgttttgcctaaaatgaagg 33702282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 33702275 - 33702207
Alignment:
Q  408 tggtgatagactagtgttgctgtgttaaacattaatgactgcttgaaaattaatgaatttagctttttt 476  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||| || ||||||    
T  33702275 tggtgatagactagtgttgctgtgttaaacattaatgactaactgaaaactaatgaattaagttttttt 33702207  T

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