View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13351_low_5 (Length: 497)
Name: NF13351_low_5
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13351_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 111 - 264
Target Start/End: Complemental strand, 24820293 - 24820140
Alignment:
| Q |
111 |
cacactatcaaagactttactcattttaaaagaaaattagtagtacccattaaaatctaactctatgacattaaatctcgttatagtacagtcttgtgca |
210 |
Q |
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| T |
24820293 |
cacactatcaaagactttactcattttaaaagaaaattagtagtacccattaaaatctaactctatgacattaaatctcgttatagtacagtcttgtgca |
24820194 |
T |
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| Q |
211 |
ttcatgtttaatttccaagatgataattttagtaaagaaaatggaaccaagact |
264 |
Q |
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| T |
24820193 |
ttcatgttcaatttccaagatgataattttagtaaagaaaatggaaccaagact |
24820140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 333 - 487
Target Start/End: Complemental strand, 24820079 - 24819925
Alignment:
| Q |
333 |
ggagaattagtgaagaaaatcatgttgaaagtataatctagcatcacgtagaatctgacagaaccttttctctaaacacttcataaattatctaaaaact |
432 |
Q |
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| T |
24820079 |
ggagaattagtgaagaaaatcatgttgaaagtataatctagcatcacgtagaatctgacagaacctttgctctaaacacttcaaaaattatctaaaatct |
24819980 |
T |
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| Q |
433 |
gctagaaacataaaaagagacagataaccaaaactcacaaaacctaattgatgat |
487 |
Q |
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| T |
24819979 |
gcttgaaacataaaaagagacagataaccaaaactcacaaaacctaattgatgat |
24819925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 35241307 - 35241372
Alignment:
| Q |
32 |
tatagggaaattacaattgacta-ttttttcctgataacattaagttccataatctggatttggta |
96 |
Q |
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| T |
35241307 |
tatagggaaattacagtcgactatttttttcttgattacattaaatcccataatctgaatttggta |
35241372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 335 - 454
Target Start/End: Original strand, 37686258 - 37686377
Alignment:
| Q |
335 |
agaattagtgaagaaaatcatgttgaaagtataatctagcatcacgtagaatctgacagaaccttttctctaaacacttcataaattatctaaaaactgc |
434 |
Q |
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| T |
37686258 |
agaattagtgaataaaaacctgttgaaagtaaaatctagcatcatgtagaatctgacaaaacctttgctctaaacacttcaaaaatcatctaaaaactgc |
37686357 |
T |
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| Q |
435 |
tagaaacataaaaagagaca |
454 |
Q |
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| T |
37686358 |
ttgaaacataaaaagagaca |
37686377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 355 - 454
Target Start/End: Complemental strand, 7497460 - 7497364
Alignment:
| Q |
355 |
tgttgaaagtataatctagcatcacgtagaatctgacagaaccttttctctaaacacttcataaattatctaaaaactgctagaaacataaaaagagaca |
454 |
Q |
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| T |
7497460 |
tgttgaaagtaaagtctagcatcacgtagaat---acaaaacctttgctctaaacacttcaaaaatcgtctaaaaactgcttgaaacataaaaagagaca |
7497364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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