View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13351_low_7 (Length: 393)
Name: NF13351_low_7
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13351_low_7 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 14205922 - 14206275
Alignment:
| Q |
14 |
agatgaagttctgaatcgattcatatcacatattgaatcgattcatatagaaacaaagagattgttgaaaaaactcaaaggcaaatgacacgatacaagc |
113 |
Q |
| |
|
|||||||| | |||||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
14205922 |
agatgaaggtttgaatcgattcatatcacatgt-gaatcgattcatataaaaacagagagattgttgaaacgactcaaaggcaaatgacacgatacaagc |
14206020 |
T |
|
| Q |
114 |
atgaatcgattcatgctcgtagtgaatcgattcatgctaagtcagagacttatctaaattgattcagacatgttgtgagacgattcaatccaagcttgga |
213 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
14206021 |
ttgaatcggttcatgctcatagtgaatcgattcaagctaagtcagagactgatctgaatcgattcagacatgttgtgagacgattcaagccaaacttgga |
14206120 |
T |
|
| Q |
214 |
atgcaacgagaagatgacaaggttcactagggtgctttaaggctttaacattctacacaat-aaggtccatactagacatcattaaaacaaacaagcagt |
312 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| | |||||||||||||||||| ||| || |||||||||||||||||||||||||| ||| |
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| T |
14206121 |
atgcagtgagaagatgccaaggttcactagggt--------gatttaacattctacacaataaagatctatactagacatcattaaaacaaacaaatagt |
14206212 |
T |
|
| Q |
313 |
gactataaagtagatgtaatcaaaacgtctaacatcatcaatactataactgaaggcttcaat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
14206213 |
gactataaagtagatgtaatcaaaacgtctaacatcatcaaaactataacttaaggcttcaat |
14206275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 14214612 - 14214965
Alignment:
| Q |
14 |
agatgaagttctgaatcgattcatatcacatattgaatcgattcatatagaaacaaagagattgttgaaaaaactcaaaggcaaatgacacgatacaagc |
113 |
Q |
| |
|
|||||||| | |||||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
14214612 |
agatgaaggtttgaatcgattcatatcacatgt-gaatcgattcatataaaaacagagagattgttgaaacgactcaaaggcaaatgacacgatacaagc |
14214710 |
T |
|
| Q |
114 |
atgaatcgattcatgctcgtagtgaatcgattcatgctaagtcagagacttatctaaattgattcagacatgttgtgagacgattcaatccaagcttgga |
213 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
14214711 |
ttgaatcggttcatgctcatagtgaatcgattcaagctaagtcagagactgatctgaatcgattcagacatgttgtgagacgattcaagccaaacttgga |
14214810 |
T |
|
| Q |
214 |
atgcaacgagaagatgacaaggttcactagggtgctttaaggctttaacattctacacaat-aaggtccatactagacatcattaaaacaaacaagcagt |
312 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| | |||||||||||||||||| ||| || |||||||||||||||||||||||||| ||| |
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|
| T |
14214811 |
atgcagtgagaagatgccaaggttcactagggt--------gatttaacattctacacaataaagatctatactagacatcattaaaacaaacaaatagt |
14214902 |
T |
|
| Q |
313 |
gactataaagtagatgtaatcaaaacgtctaacatcatcaatactataactgaaggcttcaat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
14214903 |
gactataaagtagatgtaatcaaaacgtctaacatcatcaaaactataacttaaggcttcaat |
14214965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 11585558 - 11585712
Alignment:
| Q |
46 |
ttgaatcgattcatatagaaacaaagagattgttgaaaaaactcaaaggcaaatgacacgatacaagcatgaatcgattcatgctcgtagtgaatcgatt |
145 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||| || |||||||| | |||||||||| ||||||||||||||||||| || | |||||||||| |
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|
| T |
11585558 |
ttgaatcgattcatatagagacagagagattggtgagaagactcaaagatagatgacacgatttaagcatgaatcgattcatgatcatgatgaatcgatt |
11585657 |
T |
|
| Q |
146 |
catgctaagtcagagacttatctaaattgattcagacatgttgtgagacgattca |
200 |
Q |
| |
|
|| ||||||||| |||||||||| ||| |||||||| ||| |||||| ||||||| |
|
|
| T |
11585658 |
caagctaagtcaaagacttatctgaatcgattcagatatgatgtgagtcgattca |
11585712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 7e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 60 - 373
Target Start/End: Complemental strand, 21317668 - 21317363
Alignment:
| Q |
60 |
atagaaacaaagagattgttgaaaaaactcaaaggcaaatgacacgatacaagcatgaatcgattcatgctcgtagtgaatcgattcatgctaagtcaga |
159 |
Q |
| |
|
||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||| |
|
|
| T |
21317668 |
atagaaatagagagattgttgaaacgactcaaaggcaaatgacacgatacaagcatgaatcgattcctgcttatagtgaatcgatttaagctaagtcaga |
21317569 |
T |
|
| Q |
160 |
gacttatctaaattgattcagacatgttgtgagacgattcaatccaagcttggaatgcaacgagaagatgacaaggttcactagggtgctttaaggcttt |
259 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |||| |||| ||| ||||||| | ||| |||| |||||||||||||||| ||||| |
|
|
| T |
21317568 |
gacttatctgaatcgattcagacatgttgtgagacga-tcaagccaaactttgaatgcagctagacgatgccaaggttcactagggt--------gcttt |
21317478 |
T |
|
| Q |
260 |
aacattctacacaataagg-tccatactagacatcattaaaacaaacaagcagtgactataaagtagatgtaatcaaaacgtctaacatcatcaatacta |
358 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21317477 |
aacattctacacaataaggatctatactagacatcattaaaacaaacaaatagtgactataaagtagatgtaatcaaaacgtctaacatcatcaaaacta |
21317378 |
T |
|
| Q |
359 |
taactgaaggcttca |
373 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
21317377 |
taactaaaggcttca |
21317363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 24426515 - 24426168
Alignment:
| Q |
14 |
agatgaagttctgaatcgattcatatcacatattgaatcgattcatatagaaacaaagagattgttgaaaaaactcaaaggcaaatgacacgatacaagc |
113 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| |||||||||||||||||| || | |||| |||||| | || || |||||||||||||||||||| |
|
|
| T |
24426515 |
agatgaagatttgaatcgattcatatcacatat-gaatcgattcatatagaa-cagaaagataattgaaacgaatcgaaagcaaatgacacgatacaagc |
24426418 |
T |
|
| Q |
114 |
atgaatcgattcatgctcgtagtgaatcgattcatgctaagtcagagacttatctaaattgattcagacatgttgtgagacgattcaatccaagcttgga |
213 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| ||||||||| ||||| |||| ||| |||||| | || ||||||||||||||| || || ||| |
|
|
| T |
24426417 |
atgaatcgattcatgctcatactgaatcgattcaagctaagtcaaagactcatctgaatcgattcaaaaatattgtgagacgattcatgttaaactagga |
24426318 |
T |
|
| Q |
214 |
atgcaacgagaagatgacaaggttcactagggtgctttaaggctttaacattctacacaataaggtccatactagacatcattaaaacaaacaagcagtg |
313 |
Q |
| |
|
| ||||| ||| |||| ||||| ||||||| || |||||||||||||||| |||||| || ||||||| ||||||||| |||||| ||||| |
|
|
| T |
24426317 |
a-gcaacaagaggatggcaaggatcactagagt--------gctttaacattctacataataagatctatactagccatcattaaggtaaacaaacagtg |
24426227 |
T |
|
| Q |
314 |
actataaagtagatgtaat--caaaacgtctaacatcatcaatactataactgaaggcttca |
373 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
24426226 |
actataa---agatataataaaaaaacgtctaacatcatcaaaactaacaatgaaggcttca |
24426168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 28076847 - 28077052
Alignment:
| Q |
14 |
agatgaagttctgaatcgattcatatcacatattgaatcgattcatatagaaacaaagagattgttgaaaaaactcaaaggcaaatgacacgatacaagc |
113 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| | ||||| |||||||||| |||||||| |
|
|
| T |
28076847 |
agatgaagatttgaatcgattcatatcacatat-gaatcgattcatatagaaacagagagataaatgaaacgaatcaaaagcaaatgacaatatacaagc |
28076945 |
T |
|
| Q |
114 |
atgaatcgattcatgctcgtagt--gaatcgattcatgctaagtcagagacttatctaaattgattcagacatgttgtgagacgattcaatccaagcttg |
211 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||| ||||||||||||||| |||| ||| ||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
28076946 |
atgaatcgattcatgctcatggtatgaatcgattcaagctaagtcagagactcatctgaatcgattcagacatgttgtgagtcgattcatatcaaacttg |
28077045 |
T |
|
| Q |
212 |
gaatgca |
218 |
Q |
| |
|
||||||| |
|
|
| T |
28077046 |
gaatgca |
28077052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 25 - 371
Target Start/End: Complemental strand, 4714417 - 4714078
Alignment:
| Q |
25 |
tgaatcgattcatatcacatattgaatcgattcatatagaaacaaagagattgttgaaaaaactcaaaggcaaatgacacgatacaagcatgaatcgatt |
124 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||||||||| ||||||| ||| | |||||| | |||||||||||||||| |||||||||||| |
|
|
| T |
4714417 |
tgaatcgattcatatcata-attgaatcgattcaaatagaaacagagagatttgtgagacgactcaaggataaatgacacgatacaaacatgaatcgatt |
4714319 |
T |
|
| Q |
125 |
catgctcgtagtgaatcgattcatgctaagtcagagacttatctaaattgattcagacatgttgtgagacgattcaatccaagcttggaatgcaacg-ag |
223 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||||||||||| | ||| |||||| |||||||||||||||||||| |||| ||||||||||| || | |
|
|
| T |
4714318 |
catgctcgtggtgaatcaattcaagctaagtcagagacttatttgaatcgattcatacatgttgtgagacgattcatgccaaacttggaatgcagcgaaa |
4714219 |
T |
|
| Q |
224 |
aagatgacaaggttcactagggtgctttaaggctttaacattctacacaat-aaggtccatactagacatcattaaaacaaacaagcagtgactataaag |
322 |
Q |
| |
|
||||| |||||||||||| |||||||||| |||||||| ||| ||| || ||||||||||||||| |||| ||||| || ||||||||||| |
|
|
| T |
4714218 |
aagatttcaaggttcactaaagtgctttaag--------attctacaaaataaagatctatactagacatcatttaaactaacaaacaatgactataaag |
4714127 |
T |
|
| Q |
323 |
tagatgtaatcaaaacgtctaacatcatcaatactataactgaaggctt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4714126 |
tagatgtaatcaaaacgtctaacatcatcaaaactataactgaaggctt |
4714078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 14761722 - 14761899
Alignment:
| Q |
16 |
atgaagttctgaatcgattcatatcacatattgaatcgattcatatagaaacaaagagattgttgaaaaaactcaaaggcaaatgacacgatacaagcat |
115 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||||| ||||||| |||| ||||||||||| ||||| |
|
|
| T |
14761722 |
atgaaggtttgaatcgattcatatcacat-ttgaatcaattcatatagaaacagagagatagttgaaacgactcaaaagcaagtgacacgataccagcat |
14761820 |
T |
|
| Q |
116 |
gaatcgattcatgctcgtagtgaatcgattcatgctaagtcagagacttatctaaattgattcagacatgttgtgagac |
194 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
14761821 |
gaatcgattcatgatcatagtgaatcgattcaagctaagtcagagactcatctgaatcgattcagacatgttgtgagac |
14761899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 4831732 - 4831700
Alignment:
| Q |
115 |
tgaatcgattcatgctcgtagtgaatcgattca |
147 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
4831732 |
tgaatcgattcatgctcttagtgaatcgattca |
4831700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 22149016 - 22149170
Alignment:
| Q |
25 |
tgaatcgattcatatcacatattgaatcgattcatatagaaacaaagagattgttgaaaaaactcaaaggcaaatgacacgatacaagcatgaatcgatt |
124 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||||||| ||||| | |||||| ||| | |||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
22149016 |
tgaatcgattcaaatca-aggttgaatcgattcatataaaaacagatagattggtgagacgactcaaggataaatgacacgatacaagcatgaatcgatt |
22149114 |
T |
|
| Q |
125 |
catgctcgtagtgaatcgattcatgctaagtcagagacttatctaaattgattcag |
180 |
Q |
| |
|
||||||||| ||||||||||||| | ||||| | |||||||||| ||| ||||||| |
|
|
| T |
22149115 |
catgctcgtggtgaatcgattcaagataagttacagacttatctgaatcgattcag |
22149170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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