View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13351_low_9 (Length: 347)

Name: NF13351_low_9
Description: NF13351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13351_low_9
NF13351_low_9
[»] chr8 (8 HSPs)
chr8 (17-331)||(26592036-26592347)
chr8 (44-320)||(25865579-25865855)
chr8 (44-317)||(41943826-41944099)
chr8 (70-302)||(38799392-38799624)
chr8 (70-302)||(38821893-38822125)
chr8 (70-305)||(43479673-43479908)
chr8 (73-170)||(44343984-44344081)
chr8 (70-122)||(38807073-38807125)
[»] chr4 (4 HSPs)
chr4 (34-331)||(34748623-34748920)
chr4 (76-320)||(24860425-24860669)
chr4 (46-175)||(40045368-40045497)
chr4 (44-155)||(40036080-40036191)
[»] chr5 (5 HSPs)
chr5 (69-323)||(12546997-12547251)
chr5 (76-323)||(12531368-12531615)
chr5 (82-155)||(9866668-9866741)
chr5 (78-158)||(9870022-9870102)
chr5 (268-320)||(9869894-9869946)
[»] chr7 (2 HSPs)
chr7 (70-320)||(21317453-21317703)
chr7 (70-323)||(3929960-3930213)
[»] chr2 (5 HSPs)
chr2 (70-320)||(13576227-13576477)
chr2 (44-305)||(34571419-34571680)
chr2 (211-305)||(34579054-34579148)
chr2 (211-305)||(34584803-34584897)
chr2 (55-170)||(34562636-34562751)
[»] scaffold0197 (1 HSPs)
scaffold0197 (70-320)||(30891-31140)
[»] chr1 (3 HSPs)
chr1 (213-304)||(7594401-7594492)
chr1 (44-170)||(7594104-7594230)
chr1 (213-260)||(18492747-18492794)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 26592347 - 26592036
Alignment:
Q  17 tcacaactcacgaacaacaacaagatcaagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggat 116  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26592347 tcacaactcacgaacaacaa---gatcaagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatgaat 26592251  T
Q  117 agcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26592250 agcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttg 26592151  T
Q  217 aaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcacggagtgcgacgg 316  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26592150 aaatcctgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcacggagtgcgacgg 26592051  T
Q  317 ttcctggcctgaaac 331  Q
    |||||||||||||||    
T  26592050 ttcctggcctgaaac 26592036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 44 - 320
Target Start/End: Complemental strand, 25865855 - 25865579
Alignment:
Q  44 aagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaa 143  Q
    ||||||| || ||||| ||||| | |||||||||||||||||| ||||| || || || | ||||||||| || || || |  |||||||||||||||||    
T  25865855 aagcacgttcaccacgaatacgacgagcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcctcaaacaa 25865756  T
Q  144 tccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaaga 243  Q
    ||| |||||||||||||| || ||||| || || ||    ||||||   |||||||| |  |||||||| |||||||| |||||||| ||||||||||||    
T  25865755 tcccacaagataagcctcagcagcttcctgaagtgcaagaacagcatgactctgaaatctcagatccgttttgaaatcctgagcaatttcacgaacaaga 25865656  T
Q  244 cgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcacggagtgcgacggttcc 320  Q
    |||||||| ||||| || || || | ||| || || |||||||| ||||| ||||||||||| || || ||||||||    
T  25865655 cgctggaatggaagcttacggatcaaaagctcagtactcttctgatacttacggatctcacgaagagcaacggttcc 25865579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 317
Target Start/End: Complemental strand, 41944099 - 41943826
Alignment:
Q  44 aagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaa 143  Q
    ||||||| || ||||| ||||| |  ||||| ||||| ||||| ||||| || ||||| | ||||||||| || || || |  || ||||||||||||||    
T  41944099 aagcacgttcaccacgaatacggcgtgcaagttgaatgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaa 41944000  T
Q  144 tccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaaga 243  Q
    |||||| |||||||| || || ||||| || || ||    ||||||  |||||| || | ||||||||||||||||||||||||||| ||||||||||||    
T  41943999 tccaaccagataagcttctgctgcttcctgaagtgcaagaacagcatggctctggaatctgagatccgtcttgaaatcttgagcaatttcacgaacaaga 41943900  T
Q  244 cgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcacggagtgcgacggt 317  Q
    || ||||| ||||| || || || | ||| || || ||||||||||| || ||||||||||| ||||| |||||    
T  41943899 cgttggaatggaagcttacggatcaaaagatcagtactcttctggtatttacggatctcacgaagtgcaacggt 41943826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 302
Target Start/End: Complemental strand, 38799624 - 38799392
Alignment:
Q  70 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 169  Q
    ||||||||||| |||||||||||||| ||||| | ||||||||| || || || ||||| || || ||||| |  ||||| |  ||||| || || ||||    
T  38799624 gcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagctt 38799525  T
Q  170 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 269  Q
    |||| || || || || ||   |||||| || |  ||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||| || |||||    
T  38799524 cttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgag 38799425  T
Q  270 aagttcggtgctcttctggtacttgcggatctc 302  Q
    ||| || ||||||||||| ||||| ||||||||    
T  38799424 aagctcagtgctcttctgatacttacggatctc 38799392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 302
Target Start/End: Original strand, 38821893 - 38822125
Alignment:
Q  70 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 169  Q
    ||||||||||| |||||||||||||| ||||| | ||||||||| || || || ||||| || || ||||| |  ||||| |  ||||| || || ||||    
T  38821893 gcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagctt 38821992  T
Q  170 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 269  Q
    |||| || || || || ||   |||||| || |  ||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||| || |||||    
T  38821993 cttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgag 38822092  T
Q  270 aagttcggtgctcttctggtacttgcggatctc 302  Q
    ||| || ||||||||||| ||||| ||||||||    
T  38822093 aagctcagtgctcttctgatacttacggatctc 38822125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 70 - 305
Target Start/End: Original strand, 43479673 - 43479908
Alignment:
Q  70 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 169  Q
    ||||| ||||||||||||||||| || ||||| | ||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| || || ||||    
T  43479673 gcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttcagcggctt 43479772  T
Q  170 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 269  Q
    |||| || || || |||||    ||||| || | |||||| || |||||||| ||||| || || | ||| |  |  ||||| ||||| || |  |||||    
T  43479773 cttgaagagcagaaacagcgctactctggaacctgagatcagttttgaaatcctgagcgatttccctaaccaatctttggaatggaagcttcctgatgag 43479872  T
Q  270 aagttcggtgctcttctggtacttgcggatctcacg 305  Q
    ||| ||||| |||||||| |||||||||||||||||    
T  43479873 aagctcggtactcttctgatacttgcggatctcacg 43479908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 44344081 - 44343984
Alignment:
Q  73 agctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttc 170  Q
    |||||||||||||| ||||| || || || | ||||||||| ||||| || |  || ||||||||||||||||| || ||||||||||| || |||||    
T  44344081 agctgaatatccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttc 44343984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 38807125 - 38807073
Alignment:
Q  70 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgca 122  Q
    ||||| ||||| |||||||||||||||||||| | ||||||||| || |||||    
T  38807125 gcaagttgaatgtccttaggcatgatagtaactctcttagcatgaattgcgca 38807073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 331
Target Start/End: Complemental strand, 34748920 - 34748623
Alignment:
Q  34 caacaagatcaagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtat 133  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| || || |||||||||||||    
T  34748920 caacaagatcaagcacgctcgccacggatacgcctagcgagctggatatccttaggcatgatagtgacacgcttggcatgaatggcacagaggttagtat 34748821  T
Q  134 cctcaaacaatccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctc 233  Q
    ||||||| |  ||||| ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||| |||||    
T  34748820 cctcaaagagaccaacgagataagcctcagccgcttcttgcagcgccgacacggcggagctctggaaacggagatcagtcttgaaatcctgagcgatctc 34748721  T
Q  234 acgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcacggagtgcgacggttcctggcctgaaac 331  Q
    |||||| ||||||||||| || |||||||| ||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||    
T  34748720 acgaaccagacgctggaaggggagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacgtagagcgacggttcctggtctgaaac 34748623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 76 - 320
Target Start/End: Complemental strand, 24860669 - 24860425
Alignment:
Q  76 tgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgca 175  Q
    ||||||||||| ||||| || ||||| | ||||||||| |||||||| || || ||||| ||||| | |||||| |||||||| || || |||||||| |    
T  24860669 tgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaagagtccaacgagataagcttcagcagcttcttgaa 24860570  T
Q  176 gcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttc 275  Q
    | || || |||||    ||||| ||||||||||| || |||||||||||||| || |||||||| ||||| ||||| |||||||| || |||||||| ||    
T  24860569 gagcagaaacagcgctactctggaaacggagatcggttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctc 24860470  T
Q  276 ggtgctcttctggtacttgcggatctcacggagtgcgacggttcc 320  Q
     ||||| || |||||||||||||| || || ||||| ||||||||    
T  24860469 tgtgcttttttggtacttgcggatttcgcgaagtgcaacggttcc 24860425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 40045497 - 40045368
Alignment:
Q  46 gcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatc 145  Q
    ||||||||||||||||| | ||| || | ||| || ||||| ||||| |||||||| ||||| |||||||||||||| | |||||| |||||||| |  |    
T  40045497 gcacgctcgccacggatcctccttgccaactggatgtccttgggcataatagtaactcgcttggcatggatagcgcacaagttagtgtcctcaaagagac 40045398  T
Q  146 caacaagataagcctccgccgcttcttgca 175  Q
    |||||||||| ||||| || || |||||||    
T  40045397 caacaagatatgcctcagcagcctcttgca 40045368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 40036191 - 40036080
Alignment:
Q  44 aagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaa 143  Q
    |||| ||||| |||||||| | ||| || | ||| || ||||| ||||| |||||||| ||||| ||||||||||| || | |||||| |||||||| |     
T  40036191 aagcgcgctcaccacggatcctccttgccaactggatgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagag 40036092  T
Q  144 tccaacaagata 155  Q
     |||||||||||    
T  40036091 accaacaagata 40036080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 69 - 323
Target Start/End: Original strand, 12546997 - 12547251
Alignment:
Q  69 agcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgct 168  Q
    |||||| |||||||||||||||||||||||||| | ||||||||| || || ||||| |||||||| |||||||| |||||||||||||| || || |||    
T  12546997 agcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagct 12547096  T
Q  169 tcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatga 268  Q
    ||||| || || || ||||||  ||| || || |||||||| || |||||||||||||| || ||||||||||| | |||||| ||||| || |  || |    
T  12547097 tcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataa 12547196  T
Q  269 gaagttcggtgctcttctggtacttgcggatctcacggagtgcgacggttcctgg 323  Q
    |||| |||||||||||||||||||||||||||||||| ||||| || ||||||||    
T  12547197 gaagctcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctgg 12547251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 76 - 323
Target Start/End: Complemental strand, 12531615 - 12531368
Alignment:
Q  76 tgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgca 175  Q
    |||||||||||||||||||||||||| | ||||||||| || || ||||| |||||||| |||||||| |||||||||||||| || || |||||||| |    
T  12531615 tgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaa 12531516  T
Q  176 gcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttc 275  Q
    | || || ||||||  ||| || || |||||||| || |||||||||||||| || ||||||||||| | |||||| ||||| || |  || ||||| ||    
T  12531515 gagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctc 12531416  T
Q  276 ggtgctcttctggtacttgcggatctcacggagtgcgacggttcctgg 323  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||||    
T  12531415 ggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctgg 12531368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 9866668 - 9866741
Alignment:
Q  82 tccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagata 155  Q
    |||| |||||| |||||||| | ||||||||| ||||| || ||||||||||| |||||||| |||||||||||    
T  9866668 tcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaacaagata 9866741  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 9870102 - 9870022
Alignment:
Q  78 aatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagc 158  Q
    ||||||||||||||| |||||||| | ||||||||| |||||||| || ||| |||| | |||||| ||||||| ||||||    
T  9870102 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagc 9870022  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 9869946 - 9869894
Alignment:
Q  268 agaagttcggtgctcttctggtacttgcggatctcacggagtgcgacggttcc 320  Q
    ||||| || ||||||||||||||||| ||||||||||| || || ||||||||    
T  9869946 agaagctcagtgctcttctggtacttacggatctcacgaagagcaacggttcc 9869894  T

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Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 70 - 320
Target Start/End: Complemental strand, 21317703 - 21317453
Alignment:
Q  70 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 169  Q
    ||||| ||||||||||||||||| |||||||| | ||||||||| |||||||| || || ||||| |||||||| |||||||||||||| || |||||||    
T  21317703 gcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgctt 21317604  T
Q  170 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 269  Q
    |||| || || || ||||||  |||||| || | |||||| || |||||||| ||||| || |||||||||||||| ||||| |||||||| |  || ||    
T  21317603 cttgaagagcagaaacagcactgctctggaatctgagatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatggaagttttcttatcag 21317504  T
Q  270 aagttcggtgctcttctggtacttgcggatctcacggagtgcgacggttcc 320  Q
    ||| || ||||||||||||||||||||||| ||||| || || ||||||||    
T  21317503 aagctcagtgctcttctggtacttgcggatttcacgaagcgccacggttcc 21317453  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 70 - 323
Target Start/End: Original strand, 3929960 - 3930213
Alignment:
Q  70 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 169  Q
    ||||| ||||||||||| ||||| |||||||| | ||||||||| || || || || || ||||| |||||||| ||||||||||| || || || ||||    
T  3929960 gcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcagctt 3930059  T
Q  170 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 269  Q
    |||| || || || ||||||   |||||||| || ||||| || |||||||| ||||| || |||||||| |  |  ||||| |||||||| | ||||||    
T  3930060 cttgaagagcagaaacagcactactctgaaatcgaagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgag 3930159  T
Q  270 aagttcggtgctcttctggtacttgcggatctcacggagtgcgacggttcctgg 323  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  3930160 aagttcagtgctcttctgatacttgcggatctcacgaagtgcgactgttcctgg 3930213  T

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Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 320
Target Start/End: Complemental strand, 13576477 - 13576227
Alignment:
Q  70 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 169  Q
    ||||| ||||||||||||||||| |||||||| | ||||||||| ||||| || || || |||||||||||||| |||||||||||||| || || ||||    
T  13576477 gcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttcagcagctt 13576378  T
Q  170 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 269  Q
    |||| || || || ||||||  ||| ||||||||||||||||| |||||||| |||||||| || ||||| |  |  ||||| ||||| || |  |||||    
T  13576377 cttgaagagcagaaacagcactgctttgaaaacggagatccgttttgaaatcctgagcaatttctcgaaccaatctttggaatggaagcttccttatgag 13576278  T
Q  270 aagttcggtgctcttctggtacttgcggatctcacggagtgcgacggttcc 320  Q
    ||| |||||||||||||| ||||||||||| ||||| || |||||||||||    
T  13576277 aagctcggtgctcttctgatacttgcggatttcacgaagagcgacggttcc 13576227  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 44 - 305
Target Start/End: Original strand, 34571419 - 34571680
Alignment:
Q  44 aagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaa 143  Q
    ||||||| || ||||||||||| | |||||| ||||||||||||||||| || ||||| | ||||||||| || || || |  || ||||||||||||||    
T  34571419 aagcacgttcaccacggatacggcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaa 34571518  T
Q  144 tccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaaga 243  Q
     ||||| | ||| || ||||| ||||| || || ||    || |||  |||||| || || | ||||||||||||||| |||||||| ||||||||||||    
T  34571519 accaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatcgtaaatccgtcttgaaatcctgagcaatttcacgaacaaga 34571618  T
Q  244 cgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcacg 305  Q
    |||||||| |||||||| || || | ||||||||| |||||||| ||||| || ||||||||    
T  34571619 cgctggaatggaagtttacggatcaaaagttcggtactcttctgatacttacgtatctcacg 34571680  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 34579054 - 34579148
Alignment:
Q  211 gtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcacg 305  Q
    ||||||||||  |||||||| |||||||||||||||||||| |||||||| ||||| | ||||||||| | |||||| ||||| || ||||||||    
T  34579054 gtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacg 34579148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 34584803 - 34584897
Alignment:
Q  211 gtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcacg 305  Q
    ||||||||||  |||||||| |||||||||||||||||||| |||||||| ||||| | ||||||||| | |||||| ||||| || ||||||||    
T  34584803 gtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacg 34584897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 34562636 - 34562751
Alignment:
Q  55 ccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagat 154  Q
    ||||||||||| | |||||| ||||||||||||||||| || ||||| | ||||||||| || || || |  || |||||||||||||| ||||| | ||    
T  34562636 ccacggatacggcaagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaat 34562735  T
Q  155 aagcctccgccgcttc 170  Q
    | || ||||| |||||    
T  34562736 atgcttccgctgcttc 34562751  T

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Target: scaffold0197 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 70 - 320
Target Start/End: Complemental strand, 31140 - 30891
Alignment:
Q  70 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 169  Q
    ||||| ||||||||||||||||| |||||||| | ||||||||| |||||||| || || ||||| |||||||| |||||||||||||| || || ||||    
T  31140 gcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagctt 31041  T
Q  170 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 269  Q
    |||| || || || ||||||  |||||| || | |||||  || |||||||| ||||| || |||||||||||||| ||| || ||||||| |  || ||    
T  31040 cttgaagagcagaaacagcactgctctggaatctgagataggttttgaaatcctgagcgatttcacgaacaagacgttgg-aatgaagttttcttatcag 30942  T
Q  270 aagttcggtgctcttctggtacttgcggatctcacggagtgcgacggttcc 320  Q
    ||| || ||||||||||||||||||||||| ||||| || || ||||||||    
T  30941 aagctcagtgctcttctggtacttgcggatttcacgaagcgccacggttcc 30891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 304
Target Start/End: Original strand, 7594401 - 7594492
Alignment:
Q  213 cttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcac 304  Q
    |||||||||||||||||| ||||| ||||||||||| || ||||| ||||| || | ||| || || |||||||||||||| ||||||||||    
T  7594401 cttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 7594492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 7594104 - 7594230
Alignment:
Q  44 aagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaa 143  Q
    ||||||| || ||||| || || | |||||||||||||||||| ||||| || || || | ||||||||| || || || || || || |||||||||||    
T  7594104 aagcacgttcaccacgaatgcgacgagcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaa 7594203  T
Q  144 tccaacaagataagcctccgccgcttc 170  Q
    |||||| || |||||||| || |||||    
T  7594204 tccaaccaggtaagcctcagctgcttc 7594230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 18492794 - 18492747
Alignment:
Q  213 cttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagttt 260  Q
    |||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  18492794 cttgaaatcttgagaaatttcacgaacaagacactggaatggaagttt 18492747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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