View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13352_high_1 (Length: 423)

Name: NF13352_high_1
Description: NF13352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13352_high_1
NF13352_high_1
[»] chr5 (1 HSPs)
chr5 (23-408)||(5615747-5616132)
[»] chr3 (1 HSPs)
chr3 (23-408)||(21161034-21161419)


Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 23 - 408
Target Start/End: Complemental strand, 5616132 - 5615747
Alignment:
Q  23 agggcatagaagaaagaggaggggaccgtattcattgggaaaatgtctaatttgtggtgaatttagcagtagagtttggggaaaatatgagaatggacaa 122  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5616132 agggcagagaagaaagaggaggggaccgtattcattgggaaaatgtctaatttgtggtgaatttagcagtagagtttggggaaaatatgagaatggacaa 5616033  T
Q  123 aatgaaaataggtatgcatttcagcttgtctctgcgatgatactataaaaaacaagagacaagtcagcaaggaaaattcattaccccaaaaatacttctt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5616032 aatgaaaataggtatgcatttcagcttgtctctgcgatgatactataaaaaacaagagacaagtcagcaaggaaaattcattaccccaaaaatacttctt 5615933  T
Q  223 aagtcaaattcgggttaagagaccgttcatggcatggatttgttgtaccaggatttttcagttgtgtaaaagaacagtagtatgaagggcccccggagaa 322  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  5615932 aagtcaaattcgggtaaagagaccgctcatggcatggatttgttgtaccaggctttttcagttgtgtaaaagaacagtagtatgaagggcccccgaagaa 5615833  T
Q  323 tctaatttccactcttgggagttaacacannnnnnngattgtgtaacattttgtgatcctcgatcattttgctatcccctgatgat 408  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5615832 tctaatttccactcttgggagttaacacatttttttgattgtgtaacattttgtgatcctcgatcattttgctatcccctgatgat 5615747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 23 - 408
Target Start/End: Complemental strand, 21161419 - 21161034
Alignment:
Q  23 agggcatagaagaaagaggaggggaccgtattcattgggaaaatgtctaatttgtggtgaatttagcagtagagtttggggaaaatatgagaatggacaa 122  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21161419 agggcagagaagaaagaggaggggaccgtattcattgggaaaatgtctaatttgtggtgaatttagcagtagagtttggggaaaatatgagaatggacaa 21161320  T
Q  123 aatgaaaataggtatgcatttcagcttgtctctgcgatgatactataaaaaacaagagacaagtcagcaaggaaaattcattaccccaaaaatacttctt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21161319 aatgaaaataggtatgcatttcagcttgtctctgcgatgatactataaaaaacaagagacaagtcagcaaggaaaattcattaccccaaaaatacttctt 21161220  T
Q  223 aagtcaaattcgggttaagagaccgttcatggcatggatttgttgtaccaggatttttcagttgtgtaaaagaacagtagtatgaagggcccccggagaa 322  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  21161219 aagtcaaattcgggtaaagagaccgctcatggcatggatttgttgtaccaggctttttcagttgtgtaaaagaacagtagtatgaagggcccccgaagaa 21161120  T
Q  323 tctaatttccactcttgggagttaacacannnnnnngattgtgtaacattttgtgatcctcgatcattttgctatcccctgatgat 408  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21161119 tctaatttccactcttgggagttaacacatttttttgattgtgtaacattttgtgatcctcgatcattttgctatcccctgatgat 21161034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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