View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13352_high_2 (Length: 408)

Name: NF13352_high_2
Description: NF13352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13352_high_2
NF13352_high_2
[»] chr8 (7 HSPs)
chr8 (179-265)||(6652128-6652214)
chr8 (179-265)||(6732528-6732614)
chr8 (20-91)||(6652264-6652333)
chr8 (20-91)||(6566811-6566880)
chr8 (20-91)||(6732664-6732733)
chr8 (331-370)||(6652029-6652068)
chr8 (331-370)||(6732429-6732468)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 6652214 - 6652128
Alignment:
Q  179 ttcttctgtttgattgattatctccctgttatttgttatgtttggcagcttttctctattcgctcttctttttggttacctttcccc 265  Q
    ||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  6652214 ttcttctgtttgattgattatctccctgttaattgttatgtttggttgcttttctctattcgctcttctttttggttgcctttcccc 6652128  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 6732614 - 6732528
Alignment:
Q  179 ttcttctgtttgattgattatctccctgttatttgttatgtttggcagcttttctctattcgctcttctttttggttacctttcccc 265  Q
    |||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  6732614 ttcttctgtttgattgattatctcactgttaattgttatgtttggttgcttttctctattcgctcttctttttggttgcctttcccc 6732528  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 6652333 - 6652264
Alignment:
Q  20 cttgcaacggccaagctccccatttcaagttgagaaacagcacggcatatactgtaaccaaagcttccacag 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  6652333 cttgcaacggccaagctccccatttcaagttgagaaacagcacggc--atactgtaaccaaagcttccacag 6652264  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 6566880 - 6566811
Alignment:
Q  20 cttgcaacggccaagctccccatttcaagttgagaaacagcacggcatatactgtaaccaaagcttccacag 91  Q
    |||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  6566880 cttgcaactgccaagctccccatttcaagttgagaaacagcacggc--atactgtaaccaaagcttccacag 6566811  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 6732733 - 6732664
Alignment:
Q  20 cttgcaacggccaagctccccatttcaagttgagaaacagcacggcatatactgtaaccaaagcttccacag 91  Q
    |||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  6732733 cttgcaacagccaagctccccatttcaagttgagaaacagcacggc--atactgtaaccaaagcttccacag 6732664  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 370
Target Start/End: Complemental strand, 6652068 - 6652029
Alignment:
Q  331 tagtttatatttttggtttcccttggtctgatttggtttg 370  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  6652068 tagtttatatttttggtttccattggcctgatttggtttg 6652029  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 370
Target Start/End: Complemental strand, 6732468 - 6732429
Alignment:
Q  331 tagtttatatttttggtttcccttggtctgatttggtttg 370  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  6732468 tagtttatatttttggtttccattggcctgatttggtttg 6732429  T

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