View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13352_low_3 (Length: 346)
Name: NF13352_low_3
Description: NF13352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13352_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 36 - 328
Target Start/End: Original strand, 42771777 - 42772067
Alignment:
| Q |
36 |
gaaaaatcgagagagcatttgggagaaatgacaccaagaaaacacaaaactgaaaacggtagtgactacattggcggtgctgggaagagtaacgtttggt |
135 |
Q |
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| T |
42771777 |
gaaaaatagagagagcatttgggagaaatgacaccaagaaaacacaaaactgaaaacggtagtgactacattggcggtgctgggaagagtaacgtttggt |
42771876 |
T |
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| Q |
136 |
ggcaagagttaccgttcattggcgaagagttcaggttccatgtttgtcgatttaacggatccgaggaagtcactgaggaagaataagaagatggacaaaa |
235 |
Q |
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| T |
42771877 |
ggcaagagttaccgttcattggcgaagagttcaggttccatgtttgtcgatttaacggatccgaggaagtcactgaggaagaataagaagatggagaaaa |
42771976 |
T |
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| Q |
236 |
aagctgaaatgaaacggtaaagaaggttctgcagctgaaggtgagaaagcagaagcagaaaactctctaagggtgtgtttggattgaaggttt |
328 |
Q |
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| T |
42771977 |
aagctgaaatgaaacggtaaagaaggttctgcagctgaaggtgagaaagcggaagcagaaaa--ctctaaaggtgtgtttggattgaaggttt |
42772067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 42769997 - 42770099
Alignment:
| Q |
202 |
aagtcactgaggaagaataagaagatggacaaaaaagctgaaatgaaacg-----gtaaagaaggttctgcagctgaaggtgagaaagcagaagcagaaa |
296 |
Q |
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||||||| ||| ||||| ||||||||||| |||||||||||| ||||| | |||||||||||||||||||| ||||||||||||| |||| ||||| |
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| T |
42769997 |
aagtcacagagtaagaagaagaagatggagaaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaaa |
42770096 |
T |
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| Q |
297 |
act |
299 |
Q |
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| T |
42770097 |
act |
42770099 |
T |
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