View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13352_low_4 (Length: 328)
Name: NF13352_low_4
Description: NF13352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13352_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 43462558 - 43462885
Alignment:
| Q |
1 |
ttgtttggagaaatcaaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggatggagatt |
100 |
Q |
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| T |
43462558 |
ttgtttggagaaatcaaccgggaaaacgtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggagggaaatt |
43462657 |
T |
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| Q |
101 |
aagataatgcatcacttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaag |
200 |
Q |
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| T |
43462658 |
aagataatgcatcacttggttgggagtctaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaag |
43462757 |
T |
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| Q |
201 |
gaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaactattgttagtgttgttgagacttgtca |
300 |
Q |
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| T |
43462758 |
gaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaactatcgttagtgttgttgagacttgtca |
43462857 |
T |
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| Q |
301 |
ctcacgtggagttatgcatcgtgatctt |
328 |
Q |
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| T |
43462858 |
ctcacgtggagttatgcattgtgatctt |
43462885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 43453119 - 43453446
Alignment:
| Q |
1 |
ttgtttggagaaatcaaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggatggagatt |
100 |
Q |
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| T |
43453119 |
ttgtttggagaaatcaaccaggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagagaatgatatagaggatgtgaggagggagatt |
43453218 |
T |
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| Q |
101 |
aagataatgcatcacttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaag |
200 |
Q |
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| T |
43453219 |
gaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtttatattgtaatggaattatgtgaag |
43453318 |
T |
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| Q |
201 |
gaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaactattgttagtgttgttgagacttgtca |
300 |
Q |
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| T |
43453319 |
gaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaagaacgattgttaatgttgttgaggcttgtca |
43453418 |
T |
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| Q |
301 |
ctcacgtggagttatgcatcgtgatctt |
328 |
Q |
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| T |
43453419 |
ctcacgtggagttatgcatcgtgatctt |
43453446 |
T |
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