View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13353_low_1 (Length: 398)
Name: NF13353_low_1
Description: NF13353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13353_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 156 - 380
Target Start/End: Complemental strand, 29097987 - 29097764
Alignment:
| Q |
156 |
gtcaagtagcttagtagctaaattcacacacattataaaaatatggagaaatgtaagcacaaattattcctgatagttatcaactgagctacacttacga |
255 |
Q |
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| T |
29097987 |
gtcaagtagcctggtggctaaattcacacacattataaaaatgtggagaaataagaatacaaattattcctgatagttaccaactgaactacacttacgg |
29097888 |
T |
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| Q |
256 |
aaccataaatcgacaattctatcaacacattatctactatgtaaatgtgatacatttatactgtgatcatccatatttaaagacatttatattagaaata |
355 |
Q |
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| T |
29097887 |
aaccataaattgacaattctatcaacacat-atctactatgtaaatgtgagacatttataatgtgatcatccatatttaaagacatttatattagaaata |
29097789 |
T |
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| Q |
356 |
tgcctttaaactaataacttatatc |
380 |
Q |
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| T |
29097788 |
tgcctttaaactaacaatttatatc |
29097764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 29098362 - 29098306
Alignment:
| Q |
13 |
aatatagcactaacaaaaatatagactcaagttagtaaagcaaatctatttttgttaa |
70 |
Q |
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| T |
29098362 |
aatatagcactaacaaaa-tatagactcaagttagtaaagcaaatcaatttttgttaa |
29098306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 23198590 - 23198630
Alignment:
| Q |
212 |
gcacaaattattcctgatagttatcaactgagctacactta |
252 |
Q |
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| T |
23198590 |
gcacaaattatccttgatagctatcaactgagctacactta |
23198630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 30746028 - 30746068
Alignment:
| Q |
212 |
gcacaaattattcctgatagttatcaactgagctacactta |
252 |
Q |
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||||||||||||||||||||||| |||||||| || ||||| |
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| T |
30746028 |
gcacaaattattcctgatagttaccaactgagttatactta |
30746068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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