View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13353_low_2 (Length: 248)
Name: NF13353_low_2
Description: NF13353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13353_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 40185159 - 40184940
Alignment:
| Q |
10 |
catcatcactaccaccaccaagaagaattacaactcactgacggacactccgtcaattttaacggccaattccttcccaatctcacatccattaaactcc |
109 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40185159 |
catcatcactaccaccaccaagaa---ttacaactcactgacggacactccgtcaattttaacggccaattccttcccaatctcacatccattaaactcc |
40185063 |
T |
|
| Q |
110 |
tcactcaccaagatccacctcctctgcaactcgtttacgttactgagagaaccggttttccaaccatatactacgacgctgtttacacaaccaccaccaa |
209 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40185062 |
tcactcaccaagatccacctcctcttcaactcgtttacgttactgagagaaccggttttccaaccatatactacgacgccgtttacacaaccaccaccaa |
40184963 |
T |
|
| Q |
210 |
aatcaatgataggattcaacttc |
232 |
Q |
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||||||||||||||||||||||| |
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| T |
40184962 |
aatcaatgataggattcaacttc |
40184940 |
T |
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