View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13354_high_2 (Length: 562)
Name: NF13354_high_2
Description: NF13354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13354_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Complemental strand, 31791124 - 31790595
Alignment:
| Q |
16 |
aatatatttaaaccacattttaattaacaatgtttccattggttaagaggtggacaataacaccctatatattagaaaagttcatgttttgatggaaatg |
115 |
Q |
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| T |
31791124 |
aatatatttaaaccacattttaattaacaatgtttccattggttaagaggtggtcaataacaccctatatattagaaaagttcatgttttgatggaaata |
31791025 |
T |
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| Q |
116 |
tcatgaaattgaatgatgaaggatctttatctgttgggagcaagaaggattggaatattcagtttatcaccaataggatgtgtgccactgcaaagaacca |
215 |
Q |
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| T |
31791024 |
tcatgaaattgaatgatgaaggatctttatctattgggagcaagaaggattggaatattcagtttatcaccaataggatgtgtgccactgcaaagaacca |
31790925 |
T |
|
| Q |
216 |
taaaaggaggcctatcaagggaatgtgtagagattttaaatgagggagcattgatctataacgccaagctttccacttcaattttagatttagcaagaaa |
315 |
Q |
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| T |
31790924 |
taaaaggaggcctatcaagggaatgtgtagagattttaaatgagggagcattgatctataacgccaagctttccacttcaattttagatttagcaagaaa |
31790825 |
T |
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| Q |
316 |
acttccagattcaaggcttgtctaccttgaaaactttagtcaattgcatgacattatcataaaccacaatgactatggtaagtatctcaagttcatactc |
415 |
Q |
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| T |
31790824 |
acttccagattcaaggcttgtctaccttgagaactttagtcaattgcatgacattatcataaaccacaatgactatggtaagtatctcaagttcatactc |
31790725 |
T |
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| Q |
416 |
tttaggttctctcaccacagctaaatttcatggcatgaagcttatatatttcctaattcaacttaaataagtgtgtttcaggcgatacttgtcaccttgt |
515 |
Q |
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| T |
31790724 |
tttaggttctctcaccacagctaaatttcatggcatgacgcttatatatttcctaattcaacttaaataagtgtgtttcaggcgatacttgtcgccttgt |
31790625 |
T |
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| Q |
516 |
ctatagacccaaaaaatattcatttacatg |
545 |
Q |
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| T |
31790624 |
ctatagacccaaaaaatattcatttacatg |
31790595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 102 - 475
Target Start/End: Complemental strand, 31786619 - 31786245
Alignment:
| Q |
102 |
ttttgatggaaatgtcatgaaattgaatgatgaaggatctttatctgttgggagcaagaaggattggaatattcagtttatcaccaataggatgtgtgcc |
201 |
Q |
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|||||||||||||||||||||| | | |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
31786619 |
ttttgatggaaatgtcatgaaacttcacgatgaaggatctttatctattgggagcaagaagaattggaatattcagtttatcaccagtaggatgtgtgcc |
31786520 |
T |
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| Q |
202 |
actgcaaagaaccataaaaggaggcctatcaagggaatgtgtagagattttaaatgagggagcattgatctataacgccaagctttccacttcaatttta |
301 |
Q |
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| T |
31786519 |
attccaaagaactgtaaaaggaggcctattaagggaatgtgtagagattgtaaatgagggagcattgatctttaactccaagctttcctcttccattata |
31786420 |
T |
|
| Q |
302 |
gatttagcaagaaaacttccagattcaaggcttgtctaccttgaaaactttagtcaattgcatgacattatcataaaccacaatgactatggtaagtatc |
401 |
Q |
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| T |
31786419 |
gatctagcaaaaaaacatccagattccaggcttgtctaccttgagaactttagtcaactgcatgacattatcataaaccacaatgactatggtaagtatc |
31786320 |
T |
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| Q |
402 |
tcaagttcatactctttaggttctctcaccacagctaaatttcatggcatgaagcttata-tatttcctaattca |
475 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| |
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| T |
31786319 |
tcaagttcatactctttaggttctctcaccacagataaatttcatggcatgaagcttatattatttcctacttca |
31786245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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