View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13354_high_5 (Length: 443)
Name: NF13354_high_5
Description: NF13354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13354_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 17108041 - 17108448
Alignment:
| Q |
11 |
acatcatcatagacgacattgacacaaatacgaattagggtgcttcacagaagattgtagcatcgaaaaaattcctttgaagaagctctgaggggcaaaa |
110 |
Q |
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| T |
17108041 |
acatcatcatagatgacaataacacaaagactaattagggtgcttcacaaaagattgtagcatcgaaaaaattccttctaagaagctctgaggggcaaaa |
17108140 |
T |
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| Q |
111 |
gcaccatttcagatgtccaacttcccacaccaattatcaacggggatgccctttgtatcaagataacacaagcaatgtaagaaaaaggaattgtggttac |
210 |
Q |
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| T |
17108141 |
gcaccatttcatatgtccaacttcccacatcaattatcaacggggatgccctttgtatcaagataacgcaagcaatgtaagaaaacagaattgtggttac |
17108240 |
T |
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| Q |
211 |
atgaacaccttcattgtgtgatttacaagtggactatgcaaagcctcctttcctctataccatgctcttgaagctctcaaattcgtgatgtgtttatggc |
310 |
Q |
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| T |
17108241 |
atgaacaccttcattgtgtgatttacaagtcgactatgcaaagcctcatttcctctataccatgctcttgaagctctcaaattcgtgatgtgtttgtggc |
17108340 |
T |
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| Q |
311 |
ggcagtgattcatatgacacagacaaattggttaattcttaacatcttgcgctttagttttgataaaacgtcgattaaggtagcaaaggcaaagataatt |
410 |
Q |
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| T |
17108341 |
ggcagtgattcatattgcacatacaatttggttaattcttaacatcttgcgctttagttttgataaaacgtcgattaa------aaaggcaaagataatt |
17108434 |
T |
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| Q |
411 |
atttatgtcgcatt |
424 |
Q |
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| T |
17108435 |
acttatgtcgcatt |
17108448 |
T |
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