View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13354_high_9 (Length: 307)
Name: NF13354_high_9
Description: NF13354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13354_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 25 - 301
Target Start/End: Original strand, 42250471 - 42250747
Alignment:
| Q |
25 |
gtcattttcttaagtatgttctaaaaatatctctacaaatgtttaaatggtgtcatttatttacacatggtgtaatttgatcgaatggatgtataaaagt |
124 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
42250471 |
gtcagtttcttaagtatgttcttaaaatatctctacaaatgtttaaatggtgtcatttatttacacatggtgtaatttgattgtatggatgtataaaagt |
42250570 |
T |
|
| Q |
125 |
gagaagctggagacttggaagcaactctgagggccataagactttgagggaatgaagctattaaagactctcagactttgaaggccacgtcagcatcaga |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42250571 |
gagaagctggagacttggaagcaactctgagggccataagactttgagggaatgaagctactaaagactctcagactttgaaggccacgtcagcatcaaa |
42250670 |
T |
|
| Q |
225 |
ggtctttggctagtttggtcgtcttccgatggaaggtcactatcagacactagtagtacaatttgtcttcatctcac |
301 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42250671 |
ggtttttggctagtttggtcgtcttctgatggaaggtcactatcagacactagtagtacaatttgtcttcttctcac |
42250747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 34062244 - 34062344
Alignment:
| Q |
194 |
ctcagactttgaaggccacgtcagcatcagaggtctttggctagtttggtcgtcttccgatggaaggtcactatcagacactagtagtacaatttgtctt |
293 |
Q |
| |
|
|||||||| | ||||||||||| |||||||| | ||||| || |||| || ||||| ||||||| ||||| ||| || ||| |||||||||||||||| |
|
|
| T |
34062244 |
ctcagactctaaaggccacgtcggcatcagaagcctttgactggttttgtagtcttatgatggaatatcactgtcaaactctaatagtacaatttgtctt |
34062343 |
T |
|
| Q |
294 |
c |
294 |
Q |
| |
|
| |
|
|
| T |
34062344 |
c |
34062344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University